Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e12
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    32   0.094
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    29   0.66 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    29   0.87 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    28   1.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.7  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   6.1  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   6.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.1  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 537 PIRSTRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNS 403
           P+RS++N   ++N RLP+ D  +   +G+ S  + + PP    NS
Sbjct: 212 PVRSSKNPFLSSNSRLPTDD--SSHTVGSHSFTSGTHPPIVSSNS 254


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 453 TESRDANSRPPRTRKN-SIPSPRKNPSNSLRPFGSSWSTLPSISP 322
           ++ + A++ PPRTR+N S+ S   + + S  P  +S + LP   P
Sbjct: 204 SKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKP 248


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -2

Query: 480 DALTMRLLGTESRDANSRPP----RTRKNSIPSPRKNPSNSLRPFGSSWSTL 337
           D    +L   E+   NS+PP    RT+ +S  SP  + S S   +  S STL
Sbjct: 114 DKYERKLFLDENHSTNSKPPSLPPRTKSSSQSSPMASTSTSKSRYADSLSTL 165


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 434 TPGHQEQGRIAFRVREKTLPIVSGPLVAPGVPCP 333
           TPG  EQG+ A  +  KTL   SG    P  P P
Sbjct: 236 TPGFSEQGKFAAELGAKTLDFFSGVFGEP-YPLP 268


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 149  FCVACLVARRVSQDDEARLALLLQKLSREWSLL 247
            +C+ACL+A+RV + D     LL Q+ S    LL
Sbjct: 1079 YCLACLMAQRVFRGDHIHQLLLDQENSETLLLL 1111


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 498 DRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNS--LRPFGSSWSTLPS 331
           DRL S +A    +L +    + S P  TR+NS  +     +NS   R  GS+++ L S
Sbjct: 112 DRLSSPNAKAGDILASSLFSSGSPPDTTRRNSTSNLSSVSTNSDKSRTIGSNYNMLQS 169


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 239 SLLTSVTWDSVGGAFADAIYGG 304
           +L   +T+ SVGGAF  AI GG
Sbjct: 482 NLTLYLTFSSVGGAFGSAIAGG 503


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 214  KQRQPGLVILRDPPRHQARHAEQEFDYLERDPLVAYNHGDKLYTTL 77
            + R P  V+ R P   ++R        +ERD L+AY     L   L
Sbjct: 1054 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERL 1099


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 382 VFSRTRNAILPCSWWPGVSVSGFSSE*P--HCQCIS 483
           + S+T     PC WW G   SG +   P  +C  IS
Sbjct: 252 ILSKTDTQGNPCEWWQGRKRSGETGWFPSNYCSIIS 287


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 537 PIRSTRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPS-NSLRP 361
           P+ S   NAA N   +PS+     + + T   + ++ P   + N I +   +PS N+   
Sbjct: 125 PLASDYGNAA-NFPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSN 183

Query: 360 FGSSWSTLPSISPN 319
             +S S  P ++P+
Sbjct: 184 ASASMSVPPPLTPS 197


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 464 GYSELNPETLTPGHQEQGRIAFRVREKTLPIVSGPLVAPGVPCPA 330
           G+  L P+ +   + +   I   V +KT  ++  P+   G  CPA
Sbjct: 197 GFQPLLPDVVQAVYNDPASIEQFVNDKTAAVIVEPVQGEGGICPA 241


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 489 PSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSW 346
           P       R++G +S D  S+P R      P P K+   +L P  S W
Sbjct: 528 PKLHVFLQRVIGFDSVDDESKPERRTFRKFPYP-KHWDINLNPPYSYW 574


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 548 YTATNHSQTDPISSPKVEKKVSIAAPINGQLTSEKSNGFVSAERP 682
           YT++ H+  +P  +PK E+   +A P+   +  +  N     + P
Sbjct: 24  YTSSLHNSNNPFLAPKTER---VADPVMESMADDLFNSIQKKKEP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,459
Number of Sequences: 5004
Number of extensions: 56415
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)