Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e12
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    28   6.4  
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    28   8.5  

>01_05_0343 +
           21155237-21155496,21155596-21155842,21155939-21156064,
           21156291-21156428,21156513-21156650,21156756-21157013,
           21157404-21157541,21158023-21158092,21158267-21158480,
           21158614-21158719,21159844-21160077,21160836-21161000,
           21161083-21161232,21161308-21161399,21161631-21161712,
           21161800-21161883,21161980-21162096,21162179-21162289,
           21162698-21162892,21164495-21164575,21165671-21165720,
           21165978-21165990,21166518-21166600,21166693-21166833,
           21166879-21166936,21167023-21167072,21167474-21167582,
           21167666-21167727,21168321-21168363
          Length = 1204

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 295 NSISECSSDRVPRD*SKQRPLPGQLLKKQRQPGL 194
           N+I     +++P +   Q P PG +L K   PG+
Sbjct: 508 NAIPPWDEEQIPEEIVSQSPEPGSILDKVEHPGI 541


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 462 LLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPSISP 322
           L G+ S D+  RP R R+N + S  ++  + +    SS S     SP
Sbjct: 95  LSGSASDDSGGRPHRARENGVSSSSRDGESVVAASASSPSKKRKFSP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,567,707
Number of Sequences: 37544
Number of extensions: 415242
Number of successful extensions: 1428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)