Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e12
         (715 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3752|AAF47117.1|  207|Drosophila melanogaster CG13566-P...    60   2e-09
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    30   2.7  
M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase...    30   2.7  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    30   2.7  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    30   2.7  
AY047559-1|AAK77291.1|  647|Drosophila melanogaster GH07383p pro...    29   6.3  
AE014297-3576|AAF56315.1|  647|Drosophila melanogaster CG13625-P...    29   6.3  

>AE013599-3752|AAF47117.1|  207|Drosophila melanogaster CG13566-PA
           protein.
          Length = 207

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 37/133 (27%), Positives = 61/133 (45%)
 Frame = +2

Query: 137 VEFLFCVACLVARRVSQDDEARLALLLQKLSREWSLLTSVTWDSVGGAFADAIYGGYMII 316
           V+ +  VA L+ +R+S     R+  + +K SREW+LL S++W   G  F    + GY  I
Sbjct: 17  VKIIATVAALIVKRLSDKHSERVFAINKKQSREWTLLNSISWSKEGDDFGTLTFVGYTFI 76

Query: 317 TFGLMLGRVLQELPKGRRXXXXXXXXXXXXXXXXXXXXXXASLDSVPSNLIVNASVLGSL 496
              L+L R++ E                             +++ +  +L++ A  LG+L
Sbjct: 77  AAVLLLTRII-EGTSNYGTCEIILLTCGVLFFTIEGLLIFFTVEQLSEDLLIFAYALGAL 135

Query: 497 SLFVAALFLVDLM 535
               AALF +DLM
Sbjct: 136 CFICAALFALDLM 148


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 423  PRTRKNSIPSPRKNPSNSLRPFGSSWS-TLPSISPNV 316
            P +   S  SP+ +PSN   P GS++S T P  SPN+
Sbjct: 1795 PTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831


>M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase II
           largest subunit protein.
          Length = 408

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 423 PRTRKNSIPSPRKNPSNSLRPFGSSWS-TLPSISPNV 316
           P +   S  SP+ +PSN   P GS++S T P  SPN+
Sbjct: 314 PTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 350


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 423  PRTRKNSIPSPRKNPSNSLRPFGSSWS-TLPSISPNV 316
            P +   S  SP+ +PSN   P GS++S T P  SPN+
Sbjct: 1335 PTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1371


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 423  PRTRKNSIPSPRKNPSNSLRPFGSSWS-TLPSISPNV 316
            P +   S  SP+ +PSN   P GS++S T P  SPN+
Sbjct: 1793 PTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1829


>AY047559-1|AAK77291.1|  647|Drosophila melanogaster GH07383p
           protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -2

Query: 546 DLGPIRSTRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSN 373
           D  P R  R+N  +   R   +D    R      RD    PPR R+NS  SP + P +
Sbjct: 307 DQSPPRKRRDNDQSPVRRRRDSDQSPPR----RRRDDKQTPPRRRRNSDQSPPRRPKD 360


>AE014297-3576|AAF56315.1|  647|Drosophila melanogaster CG13625-PA
           protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -2

Query: 546 DLGPIRSTRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSN 373
           D  P R  R+N  +   R   +D    R      RD    PPR R+NS  SP + P +
Sbjct: 307 DQSPPRKRRDNDQSPVRRRRDSDQSPPR----RRRDDKQTPPRRRRNSDQSPPRRPKD 360


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,877,611
Number of Sequences: 53049
Number of extensions: 682789
Number of successful extensions: 2361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)