Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16e12
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.35
AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical ... 30 1.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 30 1.9
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 30 1.9
Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical pr... 29 3.3
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 29 3.3
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.4
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 28 5.8
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 28 7.6
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 489 PSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPSISPN 319
P + + + T+S D+ + PP ++ S PR+N S F ST+P + PN
Sbjct: 471 PHRARIKIEMPDTDSEDSRTPPPTHKRKSPKKPRENGSVPTPTFKGRKSTIP-VDPN 526
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 489 PSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPSISPN 319
P + + + T+S D+ + PP ++ S PR+N S F ST+P + PN
Sbjct: 471 PHRARIKIEMPDTDSEDSRTPPPTHKRKSPKKPRENGSVPTPTFKGRKSTIP-VDPN 526
>AC024776-3|AAK68466.1| 453|Caenorhabditis elegans Hypothetical
protein Y41D4B.16 protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 513 AATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWST 340
A T S+ A T + T + A + P T S SP NP + RP +S ST
Sbjct: 364 APTTTSAALSSTASTPSIASTATSAATNPPTTTAGASTNSPATNPPTTSRPITASQST 421
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 528 STRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPS-NSLRPFGS 352
S+ + AAT + STDA++ G+ S NS + +S S PS +S P GS
Sbjct: 467 SSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEPSGSSTEPSGS 526
Query: 351 S 349
S
Sbjct: 527 S 527
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 528 STRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPS-NSLRPFGS 352
S+ + AAT + STDA++ G+ S NS + +S S PS +S P GS
Sbjct: 467 SSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEPSGSSTEPSGS 526
Query: 351 S 349
S
Sbjct: 527 S 527
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 528 STRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPS-NSLRPFGS 352
S+ + AAT + STDA++ G+ S NS + +S S PS +S P GS
Sbjct: 467 SSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEPSGSSTEPSGS 526
Query: 351 S 349
S
Sbjct: 527 S 527
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 528 STRNNAATNNDRLPSTDALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPS-NSLRPFGS 352
S+ + AAT + STDA++ G+ S NS + +S S PS +S P GS
Sbjct: 467 SSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEPSGSSTEPSGS 526
Query: 351 S 349
S
Sbjct: 527 S 527
>Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical
protein M05B5.3 protein.
Length = 403
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 528 STRNNAATNNDRLPSTDALTMRLLGTESRD--ANSRPPRTRKNSIPSPRKNPSNS 370
ST ++ ++ + ++DA + GTES D A+S PP + + P+P+ N +S
Sbjct: 243 STVTSSTSDPNAPTASDAASGTGTGTESSDTPASSAPPTSAASGPPAPKSNDKDS 297
>Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical
protein C17E4.3 protein.
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 480 DALTMRLLGTESRDANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPSISPNV 316
+ LT+ +G + ANSR TR+ S SP + +R S +S S V
Sbjct: 311 EKLTLSPIGLDDLFANSRATSTRRESGISPESSSRRDMRKTHSVYSVCSSFGTGV 365
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 566 SQTDPISSPKVEKKVSIAAPINGQLTSEKSNGFVSAERPK 685
S+T SSPKV KV A+P +++S + FV R +
Sbjct: 596 SETSKNSSPKVNLKVESASPSTSEVSSIEHKPFVPPARSR 635
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 464 LIVNASVLGSLSLFVAALFLVDLMGPRSYTATNHSQTDPISSPKVEKKVSIAAPINGQLT 643
L+V++S GS S V + G T+T++ T S+P K A+P T
Sbjct: 465 LVVSSSSSGSSSTVVTSTITPSTQGVP--TSTSNQPTPSTSNPTTPKSTVTASPSTTGAT 522
Query: 644 SEKSNGFVSAERP 682
S S +++ P
Sbjct: 523 STASPSTITSSAP 535
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 492 LPSTDALTMRLLGTESRDANS----RPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPS 331
+PS A+T L S+D+N PP T ++ P P P NS+ S+ + +PS
Sbjct: 308 MPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPVPS 365
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 441 DANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTL 337
+ S P + PSP NPS+S P GSS ST+
Sbjct: 399 NTGSTTPSQTSSQSPSPSMNPSSS-TPTGSSQSTI 432
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 441 DANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTL 337
+ S P + PSP NPS+S P GSS ST+
Sbjct: 606 NTGSTTPSQTSSQSPSPSMNPSSS-TPTGSSQSTI 639
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 441 DANSRPPRTRKNSIPSPRKNPSNSLRPFGSSWSTL 337
+ S P + PSP NPS+S P GSS ST+
Sbjct: 606 NTGSTTPSQTSSQSPSPSMNPSSS-TPTGSSQSTI 639
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 492 LPSTDALTMRLLGTESRDANS----RPPRTRKNSIPSPRKNPSNSLRPFGSSWSTLPS 331
+PS A+T L S+D+N PP T ++ P P P NS+ S+ + +PS
Sbjct: 308 MPSPHAVTPELKRLASKDSNVDRPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPVPS 365
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Frame = -2
Query: 453 TESRDANSR-PPRTRKNS-----IPSPR---KNPSNSLRPFGSS 349
+E+R +NSR PPR K S PSPR ++ SNS R GSS
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSS 557
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Frame = -2
Query: 453 TESRDANSR-PPRTRKNS-----IPSPR---KNPSNSLRPFGSS 349
+E+R +NSR PPR K S PSPR ++ SNS R GSS
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSS 557
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,726
Number of Sequences: 27780
Number of extensions: 336886
Number of successful extensions: 1311
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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