Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e11
         (975 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical pr...    30   2.9  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   8.8  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   8.8  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   8.8  

>U29244-5|AAC71090.1|  378|Caenorhabditis elegans Hypothetical
           protein ZK1248.9 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 228 YKTTYEQACINISKENRVKHGDPLYLSP 311
           Y+TT   ACIN  KE  V+ G  +Y +P
Sbjct: 16  YQTTANDACINRLKELNVESGAKIYTTP 43


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +3

Query: 258 NISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEHVLP 416
           +I K      G PLYL  ++I   KI  I    R   H A  LQN   E + P
Sbjct: 41  SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGMPP 93


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 346 SCSCAPRCTTRRSCKIGFTNTCCPSAP 426
           SC CAP C    SC +      CP+ P
Sbjct: 45  SCGCAPACPQAPSCPVCPPPQPCPAPP 71


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 415  GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 242
            GN     + C+++   +      CI   LSSN+     D Y+G  C T  S L LI    
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866

Query: 241  YVVLYL 224
              +L+L
Sbjct: 1867 LALLFL 1872


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 415  GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 242
            GN     + C+++   +      CI   LSSN+     D Y+G  C T  S L LI    
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866

Query: 241  YVVLYL 224
              +L+L
Sbjct: 1867 LALLFL 1872


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,325,524
Number of Sequences: 27780
Number of extensions: 392042
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)