Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e11
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   5.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 362 QDAQRGGAAKLVLRTRVAPVHRV 430
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 362 QDAQRGGAAKLVLRTRVAPVHRV 430
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 461 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 360
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 461 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 360
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 953  RSWPQFXGWSSPSTFLTGTVFAKXNXPILTXAILI 849
            R+ P F G SSP+  L G   A     ++  +I +
Sbjct: 923  RASPAFSGTSSPTNSLVGKTVAVNFRDVIAKSISV 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,352
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)