Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e09
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...   173   2e-44
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   5.1  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   5.1  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   5.1  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   5.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   8.9  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score =  173 bits (421), Expect = 2e-44
 Identities = 87/193 (45%), Positives = 113/193 (58%)
 Frame = +1

Query: 166 TMVKILFLHPDLGIGGAERLVVDAALAFQKKGHEVAFYTNHHDPTHCFAETRDGTFRVTV 345
           T +KI F+HPDLGIGGAERLVVDAA+  Q  G EV  +T+H D  HCF E RDGT +V V
Sbjct: 15  TPIKIAFIHPDLGIGGAERLVVDAAVGLQSLGKEVVVFTSHCDKKHCFEEIRDGTIKVKV 74

Query: 346 VGDWIPRSILGRFKXXXXXXXXXXXXXXXXXXXXPNEEPLLIFCDSISLCIPFLKMARGP 525
            GDW+P SI GR                        +    I  D +S C+PFL +A   
Sbjct: 75  YGDWLPSSIFGRLSIFCSSLRQVYLTMILLTNYMHFD---AIIVDQLSTCVPFLLLASQ- 130

Query: 526 FRVIFYCHHPDKLLTSEGGILKKLYRAPLNWLEELTTAKADKVLVNSKYTARVYQDAFQS 705
             ++FYCH PDK L   GGILKKLYR P + +E  +   AD+++VNSK+TA V++ AF  
Sbjct: 131 -MILFYCHFPDKYLAKRGGILKKLYRIPFDTVEAESVRLADRIVVNSKFTASVFKKAFPK 189

Query: 706 IKDIPDICYPSIN 744
           I+    I +P ++
Sbjct: 190 IRKPLRIVHPCVD 202


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 680 LAVYLLLTKTLSALAVVNSSSQLSGA 603
           L V LL  +TL    V+NSSS LSG+
Sbjct: 408 LNVSLLRDETLFTAPVINSSSSLSGS 433


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 110 WMFLF-VQMCN*IELVYPLEQW*KYFFFIQ 196
           W FL   ++ +  E+V P ++W +++FF+Q
Sbjct: 282 WNFLMDSKLKHLCEMVEPFDEWEEFYFFLQ 311


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 153 CILLNNGENTFSSSRLGYRRC*ATCSRCRIGVSEERSR 266
           C+LLN  EN   SSR+   R   T  R R+G +   SR
Sbjct: 167 CVLLNYQENETLSSRISLSRRGQT-RRRRVGAAARASR 203


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 253 KKGHEVAFYTNHHDPTHCFAETRDGTFRVT 342
           + G  +  YT H +P  C A T DG   VT
Sbjct: 356 RSGQLLGEYTGHQEPILCMAITPDGKRVVT 385


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 459 FFIRNNVPCHISSCINHTYIGTCSLKSSQNGPGYPIANNRNTKCTIT 319
           F+   + P  +    N  Y  T  LKS+    GY I N  +   T+T
Sbjct: 396 FYAIYHGPNGLQEIANRIYASTSFLKSALESSGYKIVNKSHFFDTLT 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,243
Number of Sequences: 5004
Number of extensions: 69588
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)