Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e09
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771...   136   2e-32
08_02_0610 + 19307537-19308011,19308187-19310846                       29   4.0  
04_03_0357 + 14852584-14853058,14853116-14855754                       29   4.0  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   7.0  
04_01_0106 + 1102880-1105691,1105781-1105806                           28   7.0  
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    28   9.3  

>04_04_0966 +
           29776340-29776433,29776581-29776682,29777038-29777154,
           29777428-29777621,29777702-29777807,29777908-29778055,
           29778201-29778337,29778436-29778602,29778681-29778974
          Length = 452

 Score =  136 bits (328), Expect = 2e-32
 Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
 Frame = +1

Query: 208 GGAERLVVDAALAFQKKGHEVAFYTNHHDPTHCFAETRDGTFRVTVVGDWIPRSILGRFK 387
           GGAERL+VDAA      GH+V  +T+HHD   CF ET  G F V V GD++PR I  RF 
Sbjct: 66  GGAERLIVDAACQLAVHGHDVHVFTSHHDKNRCFEETVSGPFEVKVYGDFLPRHIFYRF- 124

Query: 388 XXXXXXXXXXXXXXXXXXXXPNEEPLLIFCDSISLCIPFLKMARGPFRVIFYCHHPDKLL 567
                               P+ + +L+  D +S+ IP LK+ +   +++FYCH PD LL
Sbjct: 125 HAICAYLRCIFVAMCVLLWWPSFDIILV--DQVSVVIPLLKL-KAKSKIVFYCHFPDMLL 181

Query: 568 TSEGGILKKLYRAPLNWLEELTTAKADKVLVNSKYTARVYQDAFQSI--KDI-PDICYPS 738
                +L++LYR P++ +EE TT  AD +LVNSK+TA  +   F S+  + + P + YP+
Sbjct: 182 AQHTTMLRRLYRKPIDMIEETTTGMADLILVNSKFTATTFARTFCSLHARGVEPAVLYPA 241

Query: 739 INTXIF 756
           ++   F
Sbjct: 242 VSVEQF 247


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 441 VPCHIS---SCINHTYIGTCSLKSSQNGPGYPIANNRNTK 331
           VP H+S   S  +H    TC+++   N PG P +N+ N K
Sbjct: 502 VPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSNLK 541


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 441 VPCHIS---SCINHTYIGTCSLKSSQNGPGYPIANNRNTK 331
           VP H+S   S  +H    TC+++   N PG P +N+ N K
Sbjct: 542 VPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSNLK 581


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 493 CIPFLKMARGPFRVIFYCHHPDKLLTSEGGILKKLYRAPLNWLEELTTAKADKVLVNS-K 669
           C+ F  + +  FR     +  ++    E GILKK   A L  +E+L   KAD  L  + K
Sbjct: 33  CLVFATLPK--FRYYQISNKKERKKVREVGILKKDPEAILEQIEKLEKMKADGALDKARK 90

Query: 670 YTARVYQDAFQSI 708
           +  R  +D +  I
Sbjct: 91  HKKRQLEDTYNLI 103


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 557 INYLPQRVEFLKSYTGHHLIGLRN 628
           + YLPQ +EFLKS    +L+G+ +
Sbjct: 874 LEYLPQGMEFLKSVEEFNLVGMHH 897


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 298 LDRDGLCRKQLRDLSSETPMRHRLQVAQHRRYPSLDEEKVFSPLFKRIHQFYLITHLYK* 119
           ++ D +    L  L     +  ++   ++R    L   K+FS +F  +H F+L+  L   
Sbjct: 417 MEEDDMLFNVLLQLLDAPLISSKIDSMENRWASELIGGKLFSSIFDPVHVFHLLLLLLHY 476

Query: 118 EHPVL-QYNVNKGGG 77
           +H VL  Y ++K  G
Sbjct: 477 DHLVLVDYLISKDVG 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,710
Number of Sequences: 37544
Number of extensions: 428327
Number of successful extensions: 1010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)