Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e03
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    80   3e-16
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    30   0.39 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.69 
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    27   3.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   8.5  

>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 22/181 (12%)
 Frame = +3

Query: 258 LFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHLRKALNFTAHIAYRGGIIC 437
           L  +  H GH     N   + +IYG R G  I  LD T  +LR+A++    IA   GII 
Sbjct: 53  LLSSGAHLGHSTSIWNPYTQPFIYGKREGIHIISLDQTMVYLRRAISVVRSIAKENGIIL 112

Query: 438 FFN-RNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGAITR-------------- 572
           F   RN     +V       G +   R W  G+ TNA +  G +                
Sbjct: 113 FIGTRNGQKDSVVAAAKRARGYHIFDR-WLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171

Query: 573 -------LPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDD 731
                   PDL + LN     L   +A  ++ K  +PTIGI+D++ +P +++YP+P NDD
Sbjct: 172 DKKPSYVFPDLMVILNP----LENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 732 S 734
           S
Sbjct: 228 S 228


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 151 EVDVYLRSENPYFVYLHPVLLK 86
           E+D YL SE+  FV+ H ++LK
Sbjct: 76  EIDAYLLSESSMFVFAHKIILK 97


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = -2

Query: 90   SKSLRFFLSYLYRKRKSIDGFVF-KVFLGY 4
            S+S+  F+SYL+R  K++D  ++ K+FLG+
Sbjct: 1477 SQSMLKFISYLHRYNKNVDLEIWSKIFLGF 1506


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 33  HLLISFSYINRTKRNVMILSNTGCRYTK 116
           HL I F + N  K+N +++++ GC   K
Sbjct: 153 HLKIRFEHSNAKKKNNIVIADLGCGEAK 180


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 417 YRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNAN 548
           +R G++  +N+  L   I+E +A   G   H   W  GI+T  N
Sbjct: 303 FRSGMLQSWNKLCLKGGIIEVSASLAGSGEHAGLW-PGIWTLGN 345


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 39  LISFSYINRTKRNVMILSNTGCRYTKYGFSLLRY 140
           L+ FS++ R  +  +I+  + C   KY   LL Y
Sbjct: 325 LLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNY 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,129
Number of Sequences: 5004
Number of extensions: 75842
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)