Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16e03
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 34 0.13
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 34 0.13
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 34 0.13
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 31 1.3
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 29 2.9
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 29 3.8
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 3.8
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 29 3.8
11_06_0119 + 20321687-20323624 28 6.7
09_06_0153 - 21243108-21245660 28 6.7
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 328 MVQDLDTSFLIWIQQLNIYVKLLISQPTLHTEVE 429
+++ +D FL WI +L++ K+L S PTL+ +VE
Sbjct: 392 LMEKIDDEFLFWIVELDMTNKVLRSLPTLYIQVE 425
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 33.9 bits (74), Expect = 0.13
Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 1/161 (0%)
Frame = +3
Query: 249 VKDLFDARVHYGHKIGSLNDNMRSYIYGSRL-GHLIFDLDTTAEHLRKALNFTAHIAYRG 425
++ + A VH G K + + M Y+Y R G I +L T E L+ A I
Sbjct: 19 IQMMLAADVHLGTK--NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Query: 426 GIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGAITRLPDLCIFLNTQ 605
II R V K A G +A G FTN Q P L I + +
Sbjct: 77 DIIVQSAR-PYGQRAVLKFAQYTGAHAIAGRHTPGTFTN---QLQTSFSEPRLLILTDPR 132
Query: 606 NNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGND 728
+ H +++SA IPTI D++ + +P N+
Sbjct: 133 TD----HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 33.9 bits (74), Expect = 0.13
Identities = 44/161 (27%), Positives = 63/161 (39%), Gaps = 1/161 (0%)
Frame = +3
Query: 249 VKDLFDARVHYGHKIGSLNDNMRSYIYGSRL-GHLIFDLDTTAEHLRKALNFTAHIAYRG 425
V+ + A VH G K + + M Y+Y R G I +L T E L+ A I
Sbjct: 19 VQMMLAADVHLGTK--NCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Query: 426 GIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGAITRLPDLCIFLNTQ 605
II R V K A G +A G FTN Q P L I + +
Sbjct: 77 DIIVQSAR-PYGQRAVLKFAQYTGAHAIAGRHTPGTFTN---QLQTSFSEPRLLILTDPR 132
Query: 606 NNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGND 728
+ H +++SA IPTI D++ + +P N+
Sbjct: 133 TD----HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 12 KKL*KQTHLLISFSYINRTKRNVMILSNT-GCRYTKYGFSLLRYTSTSPQVIPENVI 179
KKL THLL F+ ++++ + LS G R + + + T+ +P+ I NV+
Sbjct: 119 KKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQEDIKMAKMTTYTPRYIGANVV 175
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 499 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 350
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 146 SPHHKTVIENYCFQSMLLFDKCFVPNSFALWITK-QVDVNCSDIVLGQKL 194
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 499 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 350
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 143 SPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 191
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 499 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 350
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 168 SPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 216
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 499 SPHSIAVFSTICAFSEFLLKKQMIPPLYAMWAVKLRALRKCSAVVSKSKM 350
SPH V C S L K +P +A+W K + CS +V K+
Sbjct: 178 SPHHKTVIENSCFRSMLLFDKCFVPNSFALWIAK-QVDVNCSDIVLGQKL 226
>11_06_0119 + 20321687-20323624
Length = 645
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 531 IFTNANQQFGAITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISY 710
++ +NQ G I LP +L QNN+L+ A + P +G +D + N N+ +
Sbjct: 515 LYLGSNQITGVIPILPPNLTWLEIQNNMLSGSVASKTFGS--APQLGFMDLSSN-NIKGH 571
Query: 711 PVPGN 725
+PG+
Sbjct: 572 -IPGS 575
>09_06_0153 - 21243108-21245660
Length = 850
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 417 YRGGIICFFN-RNSLNAHIVEKTAMECGEYAHTRFWRGG 530
Y G ++C + R LN ++E G +A FWRGG
Sbjct: 590 YDGKMVCRRDDRCELNRKVLELAPCTVGVFADRPFWRGG 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,868
Number of Sequences: 37544
Number of extensions: 406729
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -