Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e03
         (736 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013108-1|AAH13108.1|  296|Homo sapiens mitochondrial ribosomal...   238   1e-62
BC008017-1|AAH08017.1|  296|Homo sapiens mitochondrial ribosomal...   238   1e-62
AL161452-6|CAI14047.1|  296|Homo sapiens mitochondrial ribosomal...   238   1e-62
AL161452-5|CAI14046.1|  270|Homo sapiens mitochondrial ribosomal...   238   1e-62
AF151849-1|AAD34086.1|  296|Homo sapiens CGI-91 protein protein.      238   1e-62
AB055388-1|BAB62529.1|  296|Homo sapiens mitochondrial ribosomal...   238   1e-62
AB051627-1|BAB54954.1|   22|Homo sapiens mitochondrial ribosomal...    30   9.9  

>BC013108-1|AAH13108.1|  296|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 296

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 66  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 125

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 126 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 185

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 186 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 242


>BC008017-1|AAH08017.1|  296|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 296

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 66  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 125

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 126 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 185

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 186 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 242


>AL161452-6|CAI14047.1|  296|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 296

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 66  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 125

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 126 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 185

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 186 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 242


>AL161452-5|CAI14046.1|  270|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 270

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 80  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 139

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 140 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 199

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 200 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 256


>AF151849-1|AAD34086.1|  296|Homo sapiens CGI-91 protein protein.
          Length = 296

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 66  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 125

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 126 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 185

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 186 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 242


>AB055388-1|BAB62529.1|  296|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 296

 Score =  238 bits (583), Expect = 1e-62
 Identities = 110/177 (62%), Positives = 133/177 (75%)
 Frame = +3

Query: 204 PLDYPDYFGVHNLFTVKDLFDARVHYGHKIGSLNDNMRSYIYGSRLGHLIFDLDTTAEHL 383
           PL + D+F V  LF+V+ LFDARVH GHK G  +  M  YI+GSRL H I DL+ TA HL
Sbjct: 66  PLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHL 125

Query: 384 RKALNFTAHIAYRGGIICFFNRNSLNAHIVEKTAMECGEYAHTRFWRGGIFTNANQQFGA 563
           + ALNFTAH+AYR GII F +RN   ++++E  A +CGEYAHTR++RGG+ TNA   FG 
Sbjct: 126 QLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGP 185

Query: 564 ITRLPDLCIFLNTQNNILNQHTAVRDSAKMLIPTIGIVDSNCNPNLISYPVPGNDDS 734
             RLPDL IFL+T NNI   H AVRD+AKM IPT+GIVD+NCNP LI+YPVPGNDDS
Sbjct: 186 TVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDS 242


>AB051627-1|BAB54954.1|   22|Homo sapiens mitochondrial ribosomal
           protein S2 protein.
          Length = 22

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 312 MRSYIYGSRLGHLIFDLDTTA 374
           M  YI+GSRL H I DL+ TA
Sbjct: 1   MEPYIFGSRLDHDIIDLEQTA 21


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,289,885
Number of Sequences: 237096
Number of extensions: 2455652
Number of successful extensions: 3986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)