Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e03
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.98 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 156 QVIPENVIDVQQNQKNPLDYPDYF 227
           Q+IP+ V D  +N +NP+D  + F
Sbjct: 397 QMIPKQVADRLRNGENPIDTCEMF 420


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 116 FCISTPCITQNHYVSFCPIYIGKGN 42
           F + T CI    +++F PIY G GN
Sbjct: 710 FTMYTTCII---WLAFVPIYFGTGN 731


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 116 FCISTPCITQNHYVSFCPIYIGKGN 42
           F + T CI    +++F PIY G GN
Sbjct: 800 FTMYTTCII---WLAFVPIYFGTGN 821


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 320 IHIWFKTWTPH 352
           I +WF  WTP+
Sbjct: 284 ISLWFMAWTPY 294


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 320 IHIWFKTWTPH 352
           I +WF  WTP+
Sbjct: 34  ISLWFMAWTPY 44


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 116 FCISTPCITQNHYVSFCPIYIGKGN 42
           F + T C+    +++F P+Y G GN
Sbjct: 852 FTMYTTCVI---WLAFVPLYFGTGN 873


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -3

Query: 566 YSTKLLIGICEDTTSPESCMSIFSTFHCCFFHDMC 462
           Y   L  G    ++ P        T  CC  HDMC
Sbjct: 31  YPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -3

Query: 566 YSTKLLIGICEDTTSPESCMSIFSTFHCCFFHDMC 462
           Y   L  G    ++ P        T  CC  HDMC
Sbjct: 36  YPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -3

Query: 566 YSTKLLIGICEDTTSPESCMSIFSTFHCCFFHDMC 462
           Y   L  G    ++ P        T  CC  HDMC
Sbjct: 36  YPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMC 70


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 712 GYDIKLGLQFESTIPIVGINIFALSLTAV 626
           GYDI+L   F     +VG+++   S  A+
Sbjct: 47  GYDIRLRPNFGGEPLLVGMDLTIASFDAI 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,571
Number of Sequences: 438
Number of extensions: 4669
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)