Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16e01
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.6  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   8.3  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   8.3  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.3  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   8.3  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    25   8.3  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   8.3  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/47 (19%), Positives = 28/47 (59%)
 Frame = +1

Query: 454  KNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMM 594
            +N+++ +   +++++ L     ++  Q+ ++HH KK++  M  V ++
Sbjct: 1224 ENNELNSGCELLVQETLDKKSYSRTGQLGFIHHLKKKDQNMEKVPVL 1270


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
 Frame = +1

Query: 229 LPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKFQQLRKKLKVQI--LVAPMMSHQNRH 402
           L + I  +KQ  K   + + +  L NQQ +Q+     L KKL  ++  +          H
Sbjct: 253 LQAEIAVLKQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETH 312

Query: 403 LSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQY 543
            +  + L+N      + K   +T          +K   L+  KQI++
Sbjct: 313 CATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRE-LSVLKQIEF 358


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 244 KQIKQKLKVPVTRAKKMPLRNQQFK-QMGKFQQLRKKLKVQI----LVAPMMSHQNRHLS 408
           K  K  L  P+T AKKM   N+Q     G  +   +   V++    LV    + +N+ +S
Sbjct: 283 KLAKANLAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVS 342

Query: 409 PTKQLKNLTLHQLRNKNHQM 468
             +QL  L +H L + NH +
Sbjct: 343 DDEQLCFL-IH-LNDTNHNL 360


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +1

Query: 328 KFQQLRKKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLK 507
           KF    KK++ ++ +A   S +N +      L+N   H+L+N N+Q+   +  + R+   
Sbjct: 302 KFTDQTKKIE-ELSLAASRSSENENTIRRLALEN---HELKNSNNQLNNHIDDLTREKHL 357

Query: 508 SSLLNQ*KQIQYV 546
            +L N  K  +++
Sbjct: 358 IALSNNPKGDEFL 370


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 475 TVMMMLRQNLKSSLLNQ*KQIQYVHHKKKRNHQMTIVVMMNLRKRFHKNQLLH 633
           T  + L +NL S  +NQ      +HHKK++   ++ ++     +   K + L+
Sbjct: 418 TSFISLDKNLSSKFVNQITPDNRLHHKKQKRSPISQLLFSRWLEETEKRRSLN 470


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 477
           N+H+ P+K   N  L +L +K   MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 489 VTSKPKKQPVKPIKTNP 539
           V S+PK  P KP++T P
Sbjct: 298 VQSRPKNYPQKPVQTTP 314


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = +1

Query: 370 VAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMM-LR-QNLKSSLLNQ*KQIQ- 540
           V+P  S   +   P +QL    +  + N  +    T++   +R Q+LK         I+ 
Sbjct: 153 VSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRA 212

Query: 541 -YVHHKKKRNHQMTIVVMMNLRKRFHKNQLLHLPNF 645
               +++ R+  + IVVM ++++  H  Q+LH  +F
Sbjct: 213 DIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 328 KFQQLRKKLKV-QILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNL 504
           K  +L++++++ +        H +  LSP++ ++++     RNK+  + AT    LRQ L
Sbjct: 72  KSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPELRQAL 131

Query: 505 KS 510
           +S
Sbjct: 132 RS 133


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +3

Query: 387 PPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPPQ 554
           PP+     N  V    +  + +Q            T++P K P+    T P  PPQ
Sbjct: 50  PPQDIPLVNSDVPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPPQ 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,112
Number of Sequences: 5004
Number of extensions: 39835
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)