Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d20
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    79   4e-16
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    41   1e-04
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   1.8  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.2  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   5.6  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   5.6  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    25   5.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.7  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   9.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.7  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 79.0 bits (186), Expect = 4e-16
 Identities = 34/88 (38%), Positives = 55/88 (62%)
 Frame = +3

Query: 285 EWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPAN 464
           E+  +TP+P+DDG NP+  I ++  +E    YFRA++   E S R L+LT   +  NPA+
Sbjct: 16  EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAH 75

Query: 465 YTVWQYRRDLLKHLNTDLRTELDYVEAV 548
           YTVW YR  +L H  + +  EL++++ +
Sbjct: 76  YTVWAYRFQILNHTPSYIDNELEWLDEI 103



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 354 EKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTEL 530
           +K   V+ + + +L   +  ER L  TK   E++  NY VW YR  +L++ N D   EL
Sbjct: 108 QKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFN-DYSQEL 165



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 369 VYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLL----KHLNTDLRTELDY 536
           V+ Y   +LQ+     + L LT + LE +  N + W +R  +L    K ++  L  EL+Y
Sbjct: 147 VWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNY 206

Query: 537 VE 542
           ++
Sbjct: 207 LK 208


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 345 AHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLL 497
           A  E++  +   F+   +  + SE  L LT + L+ NP  Y+VW YRR++L
Sbjct: 23  AKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYSVWNYRREIL 73



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 414 ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTEL 530
           E+ L +   A+  +P + +VW Y R L+ H N +  T L
Sbjct: 216 EQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPL 254


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 318 DGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTK 437
           +G +P  +IAH E+ E++  YF  ++   EK  R+L L K
Sbjct: 205 EGLSPAELIAHKEESEEMGGYF--IVNGIEKLIRMLILPK 242


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 250 VMFYGYHTKKGRSGVMLRLFQRMTVPTQW 336
           ++++G  T  GRS ++L + +   V T+W
Sbjct: 639 ILYFGVQTHVGRSELLLDVVRTSKVATRW 667


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 273 KERPEWSDVTPVPEDDGPNPVVVIAHSEKF 362
           + R EW +  PV   D     V+I+H+ KF
Sbjct: 200 RSRTEWPEGIPVKGHDTYEDKVIISHNWKF 229


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 524 CPQVSVQMFQQISPVLPNSVVSWI 453
           CP+       +++P  PN+ +SWI
Sbjct: 347 CPRAGHSHTYELAPASPNTSISWI 370


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 402 NEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNT 512
           N++     HL   A E       + ++R D L+HLNT
Sbjct: 146 NDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNT 182


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 327 NPVVVIAHSEKF--EDVYDYFRAVLQSN 404
           NP  ++ +  +F  ++VYDY R +L+SN
Sbjct: 644 NPEWLMNYFSRFSPDEVYDYLREMLRSN 671


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 471 VWQYRRDLLKHLNTDLRT 524
           +WQ+RRD + H N +  T
Sbjct: 336 IWQHRRDYIVHNNRERNT 353


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 216 TNSLSMSDCGDSDVLWIPYKERP 284
           +N +S    GDS   WI +K RP
Sbjct: 649 SNGISNYGTGDSRCFWITHKYRP 671


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 354  EKFEDVY-DYFRAVLQSNEKSERVLH-LTKDALELNPANYTVWQYRRDLLKHLNTDLRTE 527
            +K + V+ D F+ ++  N  + +    LTKDAL  N + + +     + L H++ D+ T 
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQFFDVLTKDALYTNGSCWELSVIILNFLHHVSPDISTH 1483

Query: 528  L 530
            L
Sbjct: 1484 L 1484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,615
Number of Sequences: 5004
Number of extensions: 43323
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)