Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16d20
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 138 2e-32
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 138 2e-32
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 138 2e-32
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 138 2e-32
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 138 2e-32
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 89 1e-17
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 36 0.094
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 36 0.094
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 36 0.094
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 138 bits (333), Expect = 2e-32
Identities = 58/96 (60%), Positives = 77/96 (80%)
Frame = +3
Query: 261 WIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKD 440
++ Y++R EW+D+ PVP++DGPNPVV I +S+KF DVYDYFRAVLQ +E+SER LT+D
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRD 122
Query: 441 ALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
A+ELN ANYTVW +RR LLK L DL E++Y+ A+
Sbjct: 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 189
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 138 bits (333), Expect = 2e-32
Identities = 58/96 (60%), Positives = 77/96 (80%)
Frame = +3
Query: 261 WIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKD 440
++ Y++R EW+D+ PVP++DGPNPVV I +S+KF DVYDYFRAVLQ +E+SER LT+D
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRD 122
Query: 441 ALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
A+ELN ANYTVW +RR LLK L DL E++Y+ A+
Sbjct: 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 189
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 138 bits (333), Expect = 2e-32
Identities = 58/96 (60%), Positives = 77/96 (80%)
Frame = +3
Query: 261 WIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKD 440
++ Y++R EW+D+ PVP++DGPNPVV I +S+KF DVYDYFRAVLQ +E+SER LT+D
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRD 122
Query: 441 ALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
A+ELN ANYTVW +RR LLK L DL E++Y+ A+
Sbjct: 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 189
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 138 bits (333), Expect = 2e-32
Identities = 58/96 (60%), Positives = 77/96 (80%)
Frame = +3
Query: 261 WIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKD 440
++ Y++R EW+D+ PVP++DGPNPVV I +S+KF DVYDYFRAVLQ +E+SER LT+D
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRD 122
Query: 441 ALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
A+ELN ANYTVW +RR LLK L DL E++Y+ A+
Sbjct: 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 189
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 138 bits (333), Expect = 2e-32
Identities = 58/96 (60%), Positives = 77/96 (80%)
Frame = +3
Query: 261 WIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKD 440
++ Y++R EW+D+ PVP++DGPNPVV I +S+KF DVYDYFRAVLQ +E+SER LT+D
Sbjct: 60 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRD 119
Query: 441 ALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
A+ELN ANYTVW +RR LLK L DL E++Y+ A+
Sbjct: 120 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 155
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 130 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 186
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 88.6 bits (210), Expect = 1e-17
Identities = 39/61 (63%), Positives = 48/61 (78%)
Frame = +3
Query: 366 DVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEA 545
DVYDYFRAVLQ +E+SER LT+DA+ELN ANYTVW +RR LLK L DL E++Y+ A
Sbjct: 7 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 66
Query: 546 V 548
+
Sbjct: 67 I 67
Score = 32.7 bits (71), Expect = 0.87
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 369 VYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYV 539
V+ + R +L+S +K E + ++T +E P NY VW +RR L++ L D EL+++
Sbjct: 42 VWHFRRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFI 98
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 35.9 bits (79), Expect = 0.094
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 396 QSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTE 527
Q+ E E VL LT L NP T+W RR++L+ L T E
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPE 83
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 35.9 bits (79), Expect = 0.094
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 396 QSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTE 527
Q+ E E VL LT L NP T+W RR++L+ L T E
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPE 83
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 35.9 bits (79), Expect = 0.094
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 396 QSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTE 527
Q+ E E VL LT L NP T+W RR++L+ L T E
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPE 83
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,300,767
Number of Sequences: 237096
Number of extensions: 1441351
Number of successful extensions: 2521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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