Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16d20
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 98 3e-21
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 32 0.31
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 31 0.72
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 31 0.72
Z79755-3|CAB02108.1| 355|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.1
U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc... 27 6.7
U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac... 27 6.7
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac... 27 6.7
U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 98.3 bits (234), Expect = 3e-21
Identities = 44/93 (47%), Positives = 59/93 (63%)
Frame = +3
Query: 270 YKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALE 449
YK+ +W D+TP+ V IA +E F D + YFRA+L NEKS+RV+ L +D +
Sbjct: 12 YKDNVDWKDITPIYPSKEEEVAVKIAVTEDFTDAFAYFRAILIKNEKSDRVMALLEDCIR 71
Query: 450 LNPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 548
LNPANYTVWQYRR L L DL+ E+ Y+ +
Sbjct: 72 LNPANYTVWQYRRVCLTELGWDLKKEMRYLSDI 104
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 339 VIAHSEKFEDVYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNT 512
+I S K V+ + R ++++ +S LH + + NY WQ+R+ +++
Sbjct: 104 IIQESPKNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENKNYHAWQHRQWVVRTFKV 163
Query: 513 DLRTELDY 536
L EL +
Sbjct: 164 PLEKELTF 171
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 372 YDYFRAVLQSNEKSE-RVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRT 524
+D+ R V + ++SE L + + N +NY+ W YR LK+++ D +T
Sbjct: 162 WDHRRIVARMAKRSEAEELEFSNKLINDNFSNYSAWHYRSIALKNIHRDEKT 213
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 300 TPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQ 479
+P+P P ++AH ++ D ++ L +E + L L D P TV
Sbjct: 84 SPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKT 143
Query: 480 YRRDLLKHLNTDLRT 524
LL H + +T
Sbjct: 144 IDNRLLVHAKHEEKT 158
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 300 TPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQ 479
+P+P P ++AH ++ D ++ L +E + L L D P TV
Sbjct: 98 SPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKT 157
Query: 480 YRRDLLKHLNTDLRT 524
LL H + +T
Sbjct: 158 IDNRLLVHAKHEEKT 172
>Z79755-3|CAB02108.1| 355|Caenorhabditis elegans Hypothetical
protein F43G9.4 protein.
Length = 355
Score = 28.7 bits (61), Expect = 2.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 219 NSLSMSDCGDSDVLWIPYKERPEW 290
N++ + DV+W+PY++ P W
Sbjct: 5 NAVIAQNISKGDVIWVPYRKDPMW 28
>Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical
protein C26D10.4 protein.
Length = 839
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 348 HSEKFEDVYDYFRAVLQSNEKSERVL 425
HS + + D F L SNE SERV+
Sbjct: 315 HSRNYRQLLDIFSGELNSNEDSERVI 340
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 372 YDYFRAVLQSNEKSERVLHLTKDALEL-NPANYTVWQYRRDLLKHLNTDLRTELDYVE 542
Y++F L+S + V K+ + L +P+ Y Y R ++KH T++ + +E
Sbjct: 251 YEHFELCLKSQGYNFSVESTLKETMSLLDPSTYEKHDYMRYMVKHETTNILDDHSAIE 308
>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
transferase protein.
Length = 1151
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +3
Query: 312 EDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRD 491
+D N + + +F D Y A L S E+ + +AL++NP Y V +
Sbjct: 210 QDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDLYCVRSDLGN 269
Query: 492 LLKHLNTDLRTELDYVEAV 548
LLK + ++ Y++A+
Sbjct: 270 LLKAMGRLEEAKVCYLKAI 288
>U21320-2|ABC71824.1| 973|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform b protein.
Length = 973
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +3
Query: 312 EDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRD 491
+D N + + +F D Y A L S E+ + +AL++NP Y V +
Sbjct: 32 QDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDLYCVRSDLGN 91
Query: 492 LLKHLNTDLRTELDYVEAV 548
LLK + ++ Y++A+
Sbjct: 92 LLKAMGRLEEAKVCYLKAI 110
>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
transferase protein1, isoform a protein.
Length = 1151
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +3
Query: 312 EDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRD 491
+D N + + +F D Y A L S E+ + +AL++NP Y V +
Sbjct: 210 QDALENYKLAVKLKPEFIDAYINLAAALVSGGDLEQAVTAYFNALQINPDLYCVRSDLGN 269
Query: 492 LLKHLNTDLRTELDYVEAV 548
LLK + ++ Y++A+
Sbjct: 270 LLKAMGRLEEAKVCYLKAI 288
>U00046-3|AAC47045.2| 244|Caenorhabditis elegans Hypothetical
protein R13F6.5 protein.
Length = 244
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 297 HHSTPAFLCMVSIKHHCPRNQTC 229
HH LC+ + HHCP Q C
Sbjct: 96 HHCRRCNLCVHRMDHHCPILQLC 118
>Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical
protein F35G2.5a protein.
Length = 315
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 348 HSEKFEDVYDYFRAVLQSNEKSERVLHLTK-DALELNP-ANYTVWQYRRDLLKHLNTD 515
+S +DV+D+F +++N+++E+ + L K L+LN N Y D N+D
Sbjct: 31 YSNPDDDVFDFFPPEVKANQRTEQQIALEKVRQLQLNGFGNVAAETYYDDQPNRHNSD 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,100
Number of Sequences: 27780
Number of extensions: 237847
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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