Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d18
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   1.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   3.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.9  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   9.1  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 297 GNFMIEKEISYSINFSQDLLYKILNSYIVPNYSLAQQYFD 178
           G+F+  + +++ I  S+D+  +  N  I P  S+ ++Y D
Sbjct: 763 GHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYID 802


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 334 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 447
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -2

Query: 225 NSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWP---KDT 55
           ++Y+  NYS   +  D Y  +G    I I    N+I   V+   + +KK +  P    D 
Sbjct: 503 SNYLWFNYSHRSKEIDYYHMSGILMGIAIH---NSINLDVQMPRAFYKKLLQLPLSFNDL 559

Query: 54  NALVPLVWRESKEIKL 7
           +   P ++R  KE+ L
Sbjct: 560 DDFQPSLYRGLKELLL 575


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 533 SSSKMGKTIFDILKRLMRWLLQINHPSS 450
           +S K+GK   +IL  L+R     NHP S
Sbjct: 528 NSGKLGKNYTNILCLLLRLRQACNHPQS 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,265
Number of Sequences: 5004
Number of extensions: 53289
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)