Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d17
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...   189   4e-49
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   2.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   7.9  

>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score =  189 bits (460), Expect = 4e-49
 Identities = 92/209 (44%), Positives = 133/209 (63%)
 Frame = +1

Query: 67  MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 246
           M  F  LGD               KS++C+G+S KS +LF +VY TRYL+L   + S Y 
Sbjct: 1   MTFFSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYY 60

Query: 247 TVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLW 426
            +M++VFI +     YLM +  + TYD   DTFR E++L    +LAL+    +T+  +LW
Sbjct: 61  FLMRIVFIASESYICYLMLMTLRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISNILW 120

Query: 427 TFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIA 606
           TFSI+LESVAILPQLF++ ++ E ES+T+HYLFA+  YR LY+ +W+YR  V      +A
Sbjct: 121 TFSIWLESVAILPQLFMLQRSGETESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180

Query: 607 IISGVVQTILYCDFFYLYITKVLKGKKLQ 693
           I++G++QT+LY DF  +Y   VL+GKK +
Sbjct: 181 ILAGIIQTVLYGDFAVVYRRTVLQGKKFR 209


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 277 SYATIYLMYVKFKATYDHNHD-TFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYL 444
           SYA+I++ +   + +YD  +D  + I   LI  FI   L+    TV   L  FS+++
Sbjct: 164 SYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLV-LLCTVRSTLAFFSLFM 219


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 457 ILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIAIISGVVQTIL 636
           ++P L L+S  +  +  TS+Y   +G    L ++   Y +V  S Y    + S  + T+L
Sbjct: 52  VMPLLCLISAFQYMDKSTSNYSSIMGIRTDLNMVGNQYNWVGTSFYLGFMVFSLPLSTLL 111


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +1

Query: 562 WVYRYVVESHYELIAIISGVVQTILYCDFFYLYITKVL 675
           W+Y Y   +HY   A++  +VQ         L++ +++
Sbjct: 469 WLYVYACFAHYFSFALVLALVQQFAKIQTILLFVIEII 506


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 421 LWTFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSY--RALYLLNWVY 570
           LW  S + +S  I P+ F ++  +       HY++ +G+Y  R  +L+ W +
Sbjct: 33  LWACSKFNDSQFIKPESFTIAGFQNFFRTLGHYIY-VGAYPTRYAFLVFWSF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,946
Number of Sequences: 5004
Number of extensions: 63897
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)