Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16d17
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49887-4|CAA90056.2| 213|Caenorhabditis elegans Hypothetical pr... 285 3e-77
AF081125-1|AAC31954.1| 213|Caenorhabditis elegans ER lumen prot... 285 3e-77
U20861-10|AAA62292.1| 213|Caenorhabditis elegans Hypothetical p... 276 1e-74
AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical ... 38 0.007
Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 5.5
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF043697-5|AAB97557.2| 230|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z49887-4|CAA90056.2| 213|Caenorhabditis elegans Hypothetical
protein F09B9.3 protein.
Length = 213
Score = 285 bits (698), Expect = 3e-77
Identities = 125/207 (60%), Positives = 163/207 (78%)
Frame = +1
Query: 67 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 246
MN+FR D WKSRSC GISG+SQ+LF++V+ TRYLDL T S YN
Sbjct: 1 MNLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYN 60
Query: 247 TVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLW 426
T MK+ ++ S+ T+YLM+ KFKATYD N+D+FRIEFL+IP+ ILALLINHEF +EV+W
Sbjct: 61 TAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEFIFMEVMW 120
Query: 427 TFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIA 606
TFSIYLE+VAI+PQLF++S+T AE+IT+HYLFALGSYR LY+LNWVYRY ES ++ I+
Sbjct: 121 TFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWVYRYYTESFFDPIS 180
Query: 607 IISGVVQTILYCDFFYLYITKVLKGKK 687
+++G+VQT+LY DFFYLYIT+V++ +
Sbjct: 181 VVAGIVQTVLYADFFYLYITRVIQSNR 207
>AF081125-1|AAC31954.1| 213|Caenorhabditis elegans ER lumen protein
retaining receptor protein.
Length = 213
Score = 285 bits (698), Expect = 3e-77
Identities = 125/207 (60%), Positives = 163/207 (78%)
Frame = +1
Query: 67 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 246
MN+FR D WKSRSC GISG+SQ+LF++V+ TRYLDL T S YN
Sbjct: 1 MNLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYN 60
Query: 247 TVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLW 426
T MK+ ++ S+ T+YLM+ KFKATYD N+D+FRIEFL+IP+ ILALLINHEF +EV+W
Sbjct: 61 TAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEFIFMEVMW 120
Query: 427 TFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIA 606
TFSIYLE+VAI+PQLF++S+T AE+IT+HYLFALGSYR LY+LNWVYRY ES ++ I+
Sbjct: 121 TFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWVYRYYTESFFDPIS 180
Query: 607 IISGVVQTILYCDFFYLYITKVLKGKK 687
+++G+VQT+LY DFFYLYIT+V++ +
Sbjct: 181 VVAGIVQTVLYADFFYLYITRVIQSNR 207
>U20861-10|AAA62292.1| 213|Caenorhabditis elegans Hypothetical
protein C28H8.4 protein.
Length = 213
Score = 276 bits (676), Expect = 1e-74
Identities = 120/207 (57%), Positives = 159/207 (76%)
Frame = +1
Query: 67 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 246
MNIFR+ D WKSRSC+GIS +SQILF++V+T RYLDL +T++S YN
Sbjct: 1 MNIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYN 60
Query: 247 TVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLW 426
T MK+ F+ +YAT+YLM+ KF++TY DTFR+E L++P ILALLINH+F E+LW
Sbjct: 61 TTMKITFLAATYATVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLINHDFAPFELLW 120
Query: 427 TFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIA 606
TFSIYLE+VAILPQLFL+ T AE IT+HYLFALGSYRALY+ NW+YRY E +++ I
Sbjct: 121 TFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRYYTEDYFDPIV 180
Query: 607 IISGVVQTILYCDFFYLYITKVLKGKK 687
+++G+VQT+LY DFFYLY+T+V++ +K
Sbjct: 181 VVAGIVQTVLYADFFYLYVTRVVQTRK 207
>AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical
protein C49A9.7 protein.
Length = 391
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/79 (25%), Positives = 43/79 (54%)
Frame = +1
Query: 295 LMYVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLF 474
L+ F++ YD + T + F+ PT + +++ F +L+T +I+L + ++
Sbjct: 27 LINCTFQSFYDQMYQTHGVYFIFEPTPFVHPIVSQIF--YGILFTLTIFLALMGNFTVMW 84
Query: 475 LVSKTREAESITSHYLFAL 531
++ R+ S+T++YLF L
Sbjct: 85 IILYHRQMRSVTNYYLFNL 103
>Z81513-6|CAB04176.1| 341|Caenorhabditis elegans Hypothetical
protein F26D2.7 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 169 KSQILFSV---VYTTRYLDL-LTTHVSPYNTVMKLVFIFTSYATIYLMYVKFKATYDHNH 336
++ ILFS+ + + +L + L+ ++ Y ++ LV + Y +Y+ + +D
Sbjct: 70 RAVILFSINDWILSKNFLSIALSFWITFYLLIISLVGVQFVYRYLYIFHSTKLWYFDGVG 129
Query: 337 DTFRIEFLLIPTFILALLINHEFT 408
I +LLIPT + ++ N FT
Sbjct: 130 RALWISYLLIPTIVYSVAFNQIFT 153
>Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical
protein F15A4.4 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 142 SRSCAGIS--GKSQILFSVVYTTRYLDLLTTHVSPYNTVMKLVFIFTSYATIYLMYVKF 312
+R C IS G +I + TT ++ L +N ++ ++IF SY YVK+
Sbjct: 126 NRMCCVISPIGYEKIWNKLAVTTVFVVLALPFFGSWNLLLSRMYIFPSYGGFNASYVKY 184
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 208 YLDLLTTHVSPYNTVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEFLL-IPTFILA 384
+L + ++S Y + L+F+FT +++ Y+ + RIEFL+ + + L
Sbjct: 190 HLAWIAGYISIYQFLHVLLFVFTFTVSLFTFYLLTAQVFCIYQGQTRIEFLMDVHAYQLG 249
Query: 385 LLIN 396
LL N
Sbjct: 250 LLEN 253
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 193 VYTTRYLDLLTTHVSPYN---TVMKLVFIFTSYATIYLMYVKFKATYDHNHDTFRIEF 357
+Y TR+ + H+ P N T++ V + T +A ++ KF+ HN+ +F
Sbjct: 453 IYCTRFFGFILLHLMPVNLQWTIVAAVEMVT-FAFFIIVGYKFRPANSHNYLLLNSDF 509
>AF043697-5|AAB97557.2| 230|Caenorhabditis elegans Hypothetical
protein F56C11.5 protein.
Length = 230
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 376 ILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYL 555
+ AL F +L V+ I +S+ ILP + + + +FA+ SY + +
Sbjct: 120 LYALFHGATFQLLVVVTNPQIAADSMTILPAPMITTNVVSGFLVGLLVIFAV-SYLLIAV 178
Query: 556 LNWVYRYVVESHYELI 603
LN YVV Y+L+
Sbjct: 179 LNTWCMYVVIDSYQLL 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,570
Number of Sequences: 27780
Number of extensions: 356796
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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