Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16d15
(492 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 134 1e-31
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 134 1e-31
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 134 1e-31
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 42 9e-04
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 42 9e-04
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 42 9e-04
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 42 9e-04
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 42 9e-04
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 42 9e-04
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 42 9e-04
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 42 0.001
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 42 0.001
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 42 0.001
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 42 0.001
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 42 0.001
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.005
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.005
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 40 0.005
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 40 0.005
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 37 0.033
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 37 0.044
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 37 0.044
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 37 0.044
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 37 0.044
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 36 0.10
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 35 0.18
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 35 0.18
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 35 0.18
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 35 0.18
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 35 0.18
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 35 0.18
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 35 0.18
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 35 0.18
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 35 0.18
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 34 0.23
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 33 0.41
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 33 0.41
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 33 0.41
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 33 0.41
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 33 0.41
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 33 0.41
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 33 0.41
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 33 0.41
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 33 0.41
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 33 0.41
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 33 0.41
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 33 0.54
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 33 0.54
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 32 0.94
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 31 2.2
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 31 2.2
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.2
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 31 2.2
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.2
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 31 2.2
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 31 2.2
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 31 2.2
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 31 2.2
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 31 2.2
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 31 2.2
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 31 2.2
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 30 3.8
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 30 3.8
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 30 3.8
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 30 3.8
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 30 5.0
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 134 bits (325), Expect = 1e-31
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 379
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+ITKLDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 380 NIAMLVPGGEMP 415
NI MLVPGGE P
Sbjct: 78 NITMLVPGGEGP 89
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 134 bits (325), Expect = 1e-31
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 379
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+ITKLDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 380 NIAMLVPGGEMP 415
NI MLVPGGE P
Sbjct: 78 NITMLVPGGEGP 89
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 134 bits (325), Expect = 1e-31
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 379
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+ITKLDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 380 NIAMLVPGGEMP 415
NI MLVPGGE P
Sbjct: 78 NITMLVPGGEGP 89
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 392 L 394
L
Sbjct: 87 L 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 392 L 394
L
Sbjct: 87 L 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 392 L 394
L
Sbjct: 87 L 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 18 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 75
Query: 392 L 394
L
Sbjct: 76 L 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 392 L 394
L
Sbjct: 87 L 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 218 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 392 L 394
L
Sbjct: 87 L 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 42.3 bits (95), Expect = 9e-04
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +2
Query: 251 EMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 394
++ G + GFD+++N++LDD E S + RK +L +I+L G+NI +L
Sbjct: 42 QIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 392 LVPGGE 409
L G+
Sbjct: 85 LFVRGD 90
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 392 LVPGGE 409
L G+
Sbjct: 85 LFVRGD 90
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 392 LVPGGE 409
L G+
Sbjct: 85 LFVRGD 90
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 392 LVPGGE 409
L G+
Sbjct: 85 LFVRGD 90
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 41.9 bits (94), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 391
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 392 LVPGGE 409
L G+
Sbjct: 85 LFVRGD 90
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 376
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 377 NNIAML 394
+N+A++
Sbjct: 65 DNVAVI 70
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 376
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 377 NNIAML 394
+N+A++
Sbjct: 65 DNVAVI 70
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 376
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 377 NNIAML 394
+N+A++
Sbjct: 65 DNVAVI 70
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.005
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 376
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 377 NNIAML 394
+N+A++
Sbjct: 65 DNVAVI 70
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 37.1 bits (82), Expect = 0.033
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 200 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 376
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 377 NNI 385
+N+
Sbjct: 65 DNV 67
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 36.7 bits (81), Expect = 0.044
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 206 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 385
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 386 AML 394
ML
Sbjct: 68 IML 70
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 35.5 bits (78), Expect = 0.10
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +2
Query: 221 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 394
++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I ML
Sbjct: 4 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSIIML 58
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 34.3 bits (75), Expect = 0.23
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 6 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 65
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 66 RGENLVSMTVEGPPPKDT 83
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 6 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 65
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 66 RGENLVSMTVEGPPPKDT 83
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 33.5 bits (73), Expect = 0.41
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 33.1 bits (72), Expect = 0.54
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMP 415
G N+ + G P
Sbjct: 73 RGENLVSMTVEGPPP 87
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 33.1 bits (72), Expect = 0.54
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES-TPEGRKITKLDQ------ILL 370
I R+ I+++ + +GT + FD +N++L D E+ P+ K + ++ +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMP 415
G N+ + G P
Sbjct: 73 RGENLVSMTVEGPPP 87
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 32.3 bits (70), Expect = 0.94
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY-----ESTPEGRKITK--LDQILL 370
I R+ I+++ + +GT + FD +N++L D E+ +++ + + K L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLL 72
Query: 371 NGNNIAMLVPGGEMPGES 424
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD--VTEYESTP 331
+G + + +KND + GTL D ++N+ L D VT+ E P
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP 52
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +2
Query: 218 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK 352
+++ I +N+K+++G ++ FD NM+L++V TE + +G+K +K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +2
Query: 218 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK 352
+++ I +N+K+++G ++ FD NM+L++V TE + +G+K +K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +2
Query: 218 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK 352
+++ I +N+K+++G ++ FD NM+L++V TE + +G+K +K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +2
Query: 218 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK 352
+++ I +N+K+++G ++ FD NM+L++V TE + +G+K +K
Sbjct: 40 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 29.9 bits (64), Expect = 5.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +2
Query: 257 VGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILLNGNNIAMLVPGGEMP 415
+GT + FD +N++L D E+ PE + L +LL G N+ + G P
Sbjct: 6 IGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPP 65
Query: 416 GES 424
++
Sbjct: 66 KDT 68
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,837,851
Number of Sequences: 237096
Number of extensions: 1283738
Number of successful extensions: 2087
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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