Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d13
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   3.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.2  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   9.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   9.5  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +3

Query: 342 YDVKNLEQVFYLTNLALLTNCQNSLKPEVLATPTQALDXKDVTIQELYLAVYTLKAL 512
           Y    LE ++Y+++   LT+   +++      P + +      I ELY  +  +K+L
Sbjct: 204 YHSSKLELLYYISSTLTLTSLDQNIRCTRCTIPKRVITSMHNNIAELYNPISCIKSL 260


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 27/106 (25%), Positives = 44/106 (41%)
 Frame = +3

Query: 189 LQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLEQV 368
           LQ  +D N++  ILKDN+ S      Y+   G   L       C     +K      ++ 
Sbjct: 243 LQVNID-NKVDEILKDNIVS------YHQPSGTLSL-------CFSKNELKKHSNLTKEE 288

Query: 369 FYLTNLALLTNCQNSLKPEVLATPTQALDXKDVTIQELYLAVYTLK 506
             L  L L T+C+   +  V++      D K +TI +  L   ++K
Sbjct: 289 LLLRCLTLTTSCRQIKRSSVVSLCNSVFDGKKLTIAKCLLTSSSIK 334


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 213 RLXTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK-----NLEQVFYL 377
           RL   +KD   ++   T    + GL++LKAD+    E L    YD+K       E+V  L
Sbjct: 583 RLYIWMKDGDSTETSLTFKRIIHGLERLKADIALHSEILCFQLYDLKRDGTLRTEEVVEL 642

Query: 378 TNLALLTNC 404
           +   +L  C
Sbjct: 643 SESLILLCC 651


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +3

Query: 120  YMKMYFRVQLLILVSIAVSNANILQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQLK 299
            Y K       + + S AVS      G+  +  + T     +   DV T       ++  K
Sbjct: 877  YEKSIAYTSTIDIPSKAVSRVVGRNGST-VENIRTQFDVKIDIGDVSTEETTPVSVRGAK 935

Query: 300  ADVPNICEDLKTIKYDVKNL 359
            ADV N  +++  I  +VKNL
Sbjct: 936  ADVENAIKEISAIAEEVKNL 955


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 321 EDLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEV 428
           ED++T   +V +        N   +TNC  S  P V
Sbjct: 373 EDIETYSSEVNSCFSKMLAKNTVCVTNCVKSFSPRV 408


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 381 NLALLTNC-QNSLKPEVLATPTQALDXKDVTIQELYLAVYTLKALGKGTIYDKEDALKNL 557
           N     NC     + E++++  ++    D   + L L  Y+L  +    ++ K   ++  
Sbjct: 314 NTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSLARMNSSDLFSKARYVRRA 373

Query: 558 IQL 566
           IQL
Sbjct: 374 IQL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,979
Number of Sequences: 5004
Number of extensions: 53645
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)