Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d13
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    32   0.46 
08_01_0040 - 287030-287569,287981-288196,288269-288535                 31   1.1  
04_01_0630 - 8354628-8355803,8355837-8355926                           29   3.2  
09_04_0520 + 18286435-18287279,18287818-18288697                       29   4.2  

>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 42  LSINXKLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLX 221
           LSIN     I+TN    LL+I  ++       RVQ+  L+ + +  + IL   +  + + 
Sbjct: 568 LSINSDAANIITNGPIMLLLIKMLRLSKTSVLRVQIASLMGLLIRYSTILDIELASSGIF 627

Query: 222 TILKDNLKSK 251
             L D L+ K
Sbjct: 628 NALSDGLRDK 637


>08_01_0040 - 287030-287569,287981-288196,288269-288535
          Length = 340

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/84 (25%), Positives = 41/84 (48%)
 Frame = +3

Query: 57  KLKKILTNF*HSLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLXTILKD 236
           ++KKI+T    +LL I  I++Y +   +   L++  I    A  +   +D+  L +   +
Sbjct: 105 QIKKIVTT---NLLTIKKIRSYSQTRQQEVRLVMAKIVEEAATHM--AIDLTELLSCYSN 159

Query: 237 NLKSKDVGTLYYAVRGLKQLKADV 308
           N+K + +  L   VRG+     D+
Sbjct: 160 NMKPQMIAKLQAEVRGVVSKGQDI 183


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 156 LVSIAVSNANILQGTVDINRLXTILKDNLKSKDVG 260
           ++S+ V + NI+  T DIN     LK   + KD+G
Sbjct: 76  IISVYVDDLNIIGNTQDINEARHHLKTEFEMKDLG 110


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 405 QNSLKPEVLATPTQALDXKDVTIQELYLAVYTLKALGKGTIYD 533
           Q SL PE++A PT A     V   E YLA   +K  G G+  D
Sbjct: 401 QASLFPELIAEPTDARSMSFVGTHE-YLAPEIIKGEGHGSAVD 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,102
Number of Sequences: 37544
Number of extensions: 296580
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)