Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d13
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF077531-5|AAC64615.1|  219|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z82055-1|CAB04843.1|  405|Caenorhabditis elegans Hypothetical
           protein T26H2.1 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 333 TIKYDVKNLEQVFYLTNL-ALLTNCQNSLKPEVLATPTQ 446
           TI  +  N  QV++  N+ AL + CQNS+ P  L  P +
Sbjct: 82  TISMNFDNSFQVYFYLNIDALESTCQNSIVPLKLGIPNR 120


>AF078789-3|AAK68487.1|  295|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1b protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 222 TILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 353
           T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 180 TSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF078789-2|AAK21516.1|  318|Caenorhabditis elegans Hypothetical
           protein Y44E3B.1a protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 222 TILKDNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVK 353
           T L DN +S D    YY  +  K+  A VPN     K  KY++K
Sbjct: 180 TSLSDNDESVDDS--YYKPKSSKKTAAAVPNFVPKTKARKYNLK 221


>AF077531-5|AAC64615.1|  219|Caenorhabditis elegans Hypothetical
           protein F13C5.5 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 186 ILQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQL-KADVPNI--CEDLKTIKYDVKN 356
           IL+   + + L   ++D + ++ + T   A+  L Q+   DV  I   E+L  ++++  N
Sbjct: 121 ILKKDTNSSALPFAIEDLIDAESIATRMKAMGHLSQIANLDVDTIEYTEELVDLEFEPSN 180

Query: 357 LEQVFYLTNLALL 395
           LE +F    LAL+
Sbjct: 181 LELIFKAILLALI 193


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 348 VKNLEQVFYLTNLALLTNCQNSLKPEVLATPTQALDXKDVTIQELYLAVYT 500
           + + +  FYL   AL + C+NS  P  L  P +     D   +EL    Y+
Sbjct: 68  INSFQVYFYLNIDALQSTCRNSKVPSKLGIPNRVEIIFDKLTEELTETAYS 118


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/86 (17%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 114 KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQ 293
           K  M++   + ++++ ++   +  +L+   D+NR    LK    ++ V  +      L++
Sbjct: 63  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 122

Query: 294 LKADVPNICEDLKTIKYDVK-NLEQV 368
            K    + C++L+ +K +   N++++
Sbjct: 123 AKETYQHRCQELEKVKKETNVNVKEI 148


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/86 (17%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 114 KTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQ 293
           K  M++   + ++++ ++   +  +L+   D+NR    LK    ++ V  +      L++
Sbjct: 80  KGTMELMAEIHVMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVAEAVNLMQTTTTCLQK 139

Query: 294 LKADVPNICEDLKTIKYDVK-NLEQV 368
            K    + C++L+ +K +   N++++
Sbjct: 140 AKETYQHRCQELEKVKKETNVNVKEI 165


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 234 DNLKSKDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLALLTNCQNS 413
           DN     V T+Y  +R +  +K  V  IC   + ++ D+K L   F      L+ N    
Sbjct: 761 DNGPYCPVATVYTDIRLIPAIKDSVMRICARTRDLRLDIK-LRNRFLKAEQLLIKN--GI 817

Query: 414 LKPEVL 431
           LK E+L
Sbjct: 818 LKTEIL 823


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,393
Number of Sequences: 27780
Number of extensions: 290863
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)