Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d13
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 219  EGD*YPQCLGECWHYLL 169
            +G  YP  LG CWH ++
Sbjct: 1455 DGKDYPLRLGPCWHAVM 1471


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +3

Query: 171 VSNANILQGTVDINRLXTILKDNLKSKDVGTLYYAVRGLKQLKADVPNIC 320
           +SN N L    + N       +N  +      YY +  ++Q+   VP  C
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYC 131


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 450 LDXKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQLLKKG 578
           +D   V   ELY    T   +     Y+ ++A+   +QLLK G
Sbjct: 45  VDQPTVYHPELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHG 87


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 450 LDXKDVTIQELYLAVYTLKALGKGTIYDKEDALKNLIQLLKKG 578
           +D   V   ELY    T   +     Y+ ++A+   +QLLK G
Sbjct: 45  VDQPTVYHPELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHG 87


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +3

Query: 285 LKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEVLATPTQALDXK- 461
           L  L+ D+ N  + LK I++  KNL  +  L N A + N   +L+ + +    +  D   
Sbjct: 58  LVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATI-NIDVTLQNDEVLDWKKIFDINL 116

Query: 462 ---DVTIQELYLAVYTLKALGKGTIYDKEDA 545
                 IQE+ L +   K +  G I +  DA
Sbjct: 117 LGLTCMIQEV-LKLMKKKGINNGIIVNINDA 146


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 68  NTYKFLTLVTSNKYN*NLYEN 130
           N YK+      N YN N Y N
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNN 340


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 389 GQVCEV-KHLL*V-LDIILYRFEVLTNIWHISFQLFQSSNSIIQGA 258
           GQ+ EV +H     L I L R E+L +  H++F+L   + +  Q +
Sbjct: 146 GQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAFTQAS 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,223
Number of Sequences: 438
Number of extensions: 3665
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)