Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d12
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal...    33   0.73 
AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.      33   0.73 

>BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal
           protein L48 protein.
          Length = 212

 Score = 33.5 bits (73), Expect = 0.73
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +1

Query: 370 VKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKS 549
           + L+ +R    +  HG  K   +  AE+P       K+   KV   +I LGT Y+YGV  
Sbjct: 40  ILLSISRPYKTKPTHGIGKYKHLIKAEEP-------KKKKGKVEVRAINLGTDYEYGVL- 91

Query: 550 PNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGITPTKTVE 672
            N   T+ ++T+    A +  ++    S+ +      PTKT+E
Sbjct: 92  -NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIE 133


>AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.
          Length = 212

 Score = 33.5 bits (73), Expect = 0.73
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +1

Query: 370 VKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKS 549
           + L+ +R    +  HG  K   +  AE+P       K+   KV   +I LGT Y+YGV  
Sbjct: 40  ILLSISRPYKTKPTHGIGKYKHLIKAEEP-------KKKKGKVEVRAINLGTDYEYGVL- 91

Query: 550 PNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGITPTKTVE 672
            N   T+ ++T+    A +  ++    S+ +      PTKT+E
Sbjct: 92  -NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIE 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,905,948
Number of Sequences: 237096
Number of extensions: 1867663
Number of successful extensions: 11349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11349
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)