Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d11
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   1.7  
04_04_0500 - 25677767-25680850                                         28   3.8  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   5.1  
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    27   5.1  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    27   5.1  
04_03_0314 - 14238620-14240128                                         27   6.7  
11_01_0583 + 4636832-4637521                                           27   8.8  
05_01_0196 + 1415664-1416842                                           27   8.8  

>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 240 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 362
           W EAL L P  + G   P +LYQ  L  P   +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 142 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 240
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 184 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 294
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 395 LNPECIDEQQLSVFDKLMELVLSW--RRQSTLI*CFRPLNSRNTTGLKL 255
           +NP CI  +QL + + L+    +W   R S  I  FR L+  N+   KL
Sbjct: 396 VNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFAKL 444


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 62  KDYQVLICIVYLVRSYCDLRIMGFFTALIVNIV 160
           KD +++IC +Y V S C   IM   +  IV IV
Sbjct: 139 KDIEIVICFIYAVDSVCSRLIMLQSSLDIVMIV 171


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 264 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 127
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 300 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 160
           +L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227


>05_01_0196 + 1415664-1416842
          Length = 392

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 367 SYLFLTNLWSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYSRCA 224
           +Y F T   SW  H G   L +   G  +P ++L    +A  +Y+ CA
Sbjct: 227 TYCFDTVSCSWS-HAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAPCA 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,977
Number of Sequences: 37544
Number of extensions: 259028
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)