Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d05
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.66 
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    29   0.88 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    27   2.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.5  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   4.7  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   4.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   6.2  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   6.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   8.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.2  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 257 LHTNGSTSSIRWSVLPCSSLAVPLLLTEIGVHQFR 361
           L   G   + RW   P  SLAV LLL    VH FR
Sbjct: 354 LENAGGFWTERWGDAPVHSLAVGLLLNRSQVHYFR 388


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 154 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 297
           SYN + ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 251 RLLHTNGSTSSIRWSVLPCSSLAVPLLLTEIGVHQFR 361
           R +   G   + RW   P  SLA  L L++  VH FR
Sbjct: 304 RTMDATGGFWTERWGDAPFHSLAAGLFLSKEQVHYFR 340


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -1

Query: 228 TSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDS 70
           ++E  +V + G+ D+  NIR  +V  V E+D RT   Q  K +  +PA   D+
Sbjct: 17  SAEQLDVVESGSIDQQ-NIRAWVVRKVKENDKRTSTNQSFKWEAVKPASCLDA 68


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 139 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 249
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 210 VPDKGTGDEHANIRICIVTVVMESDARTRKC-QLQKLDDRQPAD 82
           +P+K T D + N     V  V++S  R R+  QL+ LDD Q  D
Sbjct: 34  LPEKSTSD-YENSGKGTVGQVLQSLQRVRRALQLRSLDDNQSTD 76


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 336 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 178
           V+ N        + D+RI E V P   R+ +     RT ++DE+P    GD  +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 222 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 323
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 457 PQSVYDITSNFLWEYFFRV 401
           P+S YD+TS  +WE  FR+
Sbjct: 25  PKSNYDLTSWRIWEQAFRL 43


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 427 SSRLCRKHFVESGYENISKYTGVKH*-HKYLKKGAVPSIFSWNMKPVSEETKS 582
           S+    +  V S  +  SK  G KH  H   KKG    +F + +   ++ TKS
Sbjct: 479 STAATNEESVVSNEDRTSKKAGKKHHRHHKKKKGGNKRVFGFKLHKYAKPTKS 531


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 247  MQTPSHKRIDIFYSLVGVALFVASGAII 330
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,215
Number of Sequences: 5004
Number of extensions: 71889
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)