Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d05
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0119 + 11485753-11486202                                         29   3.7  
03_06_0653 - 35305279-35306163                                         28   6.4  

>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 185 SSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSVLPCSSLAVPLLLTEIGV 349
           +SP P S TS+ + + P  + CR        S + W  + C  +A    L  I V
Sbjct: 79  ASPPPSSATSTCTALSPGTSCCRRCRRVSPLSCMLWPEIDCDDIACVRALALIDV 133


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 240 ARGRTSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKL 103
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,932,268
Number of Sequences: 37544
Number of extensions: 439303
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)