Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d05
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    29   2.5  
Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          29   3.3  
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical
           protein K10B3.2 protein.
          Length = 141

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 415 YFFRVKWPLTTVFQFSCPSELMYSNFCQ 332
           +FF  K P    F+ +CPS+++++ FCQ
Sbjct: 15  FFFDYKVPWDQYFKLNCPSQMLFTIFCQ 42


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 439 ITSNFLWEYFFRVKWPLTTVFQFSCPSELMYSNF 338
           ++++ + +Y   + WPL+ +F  SCP ++ +  F
Sbjct: 101 MSTDVIVDYLGNIHWPLSAIFTSSCPLDVKHYPF 134


>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 240 LHNADSFTQTDRHLLFAGRC 299
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 240 LHNADSFTQTDRHLLFAGRC 299
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 240 LHNADSFTQTDRHLLFAGRC 299
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 558 FHIP*KYRWYSTFLQIFMLMFDTCVFT 478
           FHIP KY+W ST      L+    V+T
Sbjct: 5   FHIPEKYQWASTLFVHVALIAGVAVYT 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,541
Number of Sequences: 27780
Number of extensions: 407639
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)