Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d05
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.8  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 406 EKSIPTKSSRLCRKHFVESGYENIS 480
           E  IP+    +C K FV+    N+S
Sbjct: 329 ENVIPSNEELICDKRFVDESANNLS 353


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 406 EKSIPTKSSRLCRKHFVESGYENIS 480
           E  IP+    +C K FV+    N+S
Sbjct: 344 ENVIPSNEELICDKRFVDESANNLS 368


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 26  STCLAIIIIKFK-FRSESWPSAGCLSSSFW 112
           S CL  ++   + F S SW +   L  SFW
Sbjct: 293 SGCLQFLVPMLQGFPSNSWVAINELQDSFW 322


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 26  STCLAIIIIKFK-FRSESWPSAGCLSSSFW 112
           S CL  ++   + F S SW +   L  SFW
Sbjct: 261 SGCLQFLVPMLQGFPSNSWVAINELQDSFW 290


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 690 HIAVFFKGYYIFIVLGSVGQA 628
           H+A  F   Y+F+ +G VG A
Sbjct: 398 HLARRFLNNYLFLAVGIVGGA 418


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 203 TKVPVTSMPISASAL 159
           T VP+TS+P S++++
Sbjct: 852 TTVPITSLPASSTSI 866


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 415 YFFRVKWPLTTVFQFSCPSELMYSNF 338
           Y  RV+W    +++ SC  ++ Y  F
Sbjct: 133 YTGRVEWKPPAIYKSSCEIDVEYFPF 158


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 679 VLQGVLYLHSIG 644
           VL+G+ YLHS G
Sbjct: 706 VLEGIRYLHSQG 717


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 679 VLQGVLYLHSIG 644
           VL+G+ YLHS G
Sbjct: 744 VLEGIRYLHSQG 755


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 415 YFFRVKWPLTTVFQFSCPSELMYSNFCQ 332
           Y  +V W    +F+ SC  ++ Y  F Q
Sbjct: 129 YTGKVLWTPPAIFKSSCEIDVRYFPFDQ 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,392
Number of Sequences: 438
Number of extensions: 4905
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)