Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16d04
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 219 3e-58
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 97 2e-21
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 91 2e-19
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 91 2e-19
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 86 6e-18
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 79 7e-16
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 74 2e-14
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 63 4e-11
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 31 0.13
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 29 0.71
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 2.9
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 26 5.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.6
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.6
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 26 6.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 8.8
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 8.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.8
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 219 bits (536), Expect = 3e-58
Identities = 105/222 (47%), Positives = 154/222 (69%), Gaps = 1/222 (0%)
Frame = +3
Query: 90 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 269
MAL VPKA G PQ+ ++G R+ G+E+AV RN NA ++ ++ R++ GPNG NK+++NH+
Sbjct: 1 MALRVPKASG-PQLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHL 59
Query: 270 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 449
+ F+T+DA TIIREL+V HPAAKL+V A+Q Q+ E+GD NFV+V +G R
Sbjct: 60 QQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIR 119
Query: 450 LGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFIS 629
+G+T EIA GYE AL +E+L + ++I+ ++ KE+ K I I SKQYG+E F+S
Sbjct: 120 MGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGNEDFLS 179
Query: 630 ELVTKACVAILP-EKTTFNVDNVRVCXILGAGLLQSEVLSGM 752
+LV KA + +LP + + FNVDN+RV I+G+ L S+V+ GM
Sbjct: 180 DLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYNSQVVKGM 221
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 97.1 bits (231), Expect = 2e-21
Identities = 62/219 (28%), Positives = 116/219 (52%), Gaps = 4/219 (1%)
Frame = +3
Query: 108 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 287
KA VP +D + +E NI A + A ++R++ GP GM+KMI + +T
Sbjct: 3 KAATVPVAFQDREKP----QEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILT 58
Query: 288 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 467
+D TI++ L V HPAAK++V S QD E GDGT V++L+G + G+ +
Sbjct: 59 NDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPT 118
Query: 468 EIADGYERALDKCLEIL-PSLICNEIKDTKN-IKEVTKGIVAAIMSKQYGHEQFISELVT 641
IA+ ++RA ++ + + + E+ D ++ ++ T + + I+S QY + ++ +
Sbjct: 119 VIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVS-QYSN--LLAPIAV 175
Query: 642 KACVAILPEKTTFNVD--NVRVCXILGAGLLQSEVLSGM 752
A + ++ + NVD ++R+ LG + +E++ G+
Sbjct: 176 DAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGL 214
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 91.1 bits (216), Expect = 2e-19
Identities = 60/224 (26%), Positives = 117/224 (52%), Gaps = 3/224 (1%)
Frame = +3
Query: 90 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 269
M+L P+ P + +LK+G G + + NINAC ++R+ GP G +K++++
Sbjct: 1 MSLGGPQIPVI--VLKEGTDDSQGRGQLL-SNINACVAVQDTIRTTLGPLGADKLMVDDR 57
Query: 270 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 449
+ +++D TI++ LD+ HPAAK +V ++ QDAEVGDGT V+V +G
Sbjct: 58 GEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 450 LGVTTSEIADGYERALDKCLEILPSLICN-EIKDTKNIKE-VTKGIVAAIMSKQY-GHEQ 620
GV++ I GY +A + + + + ++ D +++ +TK A+ SK +
Sbjct: 118 DGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNST 177
Query: 621 FISELVTKACVAILPEKTTFNVDNVRVCXILGAGLLQSEVLSGM 752
F +++V A + + ++ N + + + + G + S ++ G+
Sbjct: 178 FFTKMVVDAVLTL--DQEDLNENMIGIKKVPGGAMEDSLLVKGV 219
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 90.6 bits (215), Expect = 2e-19
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Frame = +3
Query: 168 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 347
+AV +I A K A VR++ GP G++K++I+ + VT+D TI+ +++VEH AKL+
Sbjct: 34 DAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLL 93
Query: 348 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALD---KCLEIL 518
V S+ QD E+GDGT V+VL+G G+ IADGYE+A K L+ +
Sbjct: 94 VQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAI 153
Query: 519 PSLICNEIKDTKNI-KEVTKGIVAAIMSKQYGH 614
++ ++T N+ + + + ++SK + H
Sbjct: 154 SDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDH 186
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 85.8 bits (203), Expect = 6e-18
Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%)
Frame = +3
Query: 108 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 287
+AP + G ++ SG E+ +N+ A A V+S+ GP G++KM+++ I VT
Sbjct: 3 QAPRESTLFLSGEKI-SG-EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60
Query: 288 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 467
+D TI+ LDVEHPA K++V +Q QD EVGDGT V++++ + + +
Sbjct: 61 NDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPT 120
Query: 468 EIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHE-QFISELVTK 644
I GY A+ + ++ + ++ + D+ + + ++ SK G++ F S +
Sbjct: 121 TIITGYRLAIREAVKFMTDVLSCSV-DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVD 179
Query: 645 ACVAILPE----KTTFNVDNVRVCXILGAGLLQSEVLSG 749
A +++ +T + V V + G +S ++ G
Sbjct: 180 AMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKG 218
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 79.0 bits (186), Expect = 7e-16
Identities = 40/120 (33%), Positives = 65/120 (54%)
Frame = +3
Query: 168 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 347
+A NI A K A +R+ GP M KM+++ + +T+D I+RE++V HPAAK M
Sbjct: 19 KAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSM 78
Query: 348 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 527
+ ++ QD EVGDGT VI+L+G + + +++AL+ L I+ +
Sbjct: 79 IELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEI 138
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 74.1 bits (174), Expect = 2e-14
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 1/171 (0%)
Frame = +3
Query: 216 VRSAYGPNGMNKMIINHIDKQFV-TSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGT 392
V+S GP GM+K++ ++ V T+D TI++ + +++ AAK++V S++QD EVGDGT
Sbjct: 36 VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGT 95
Query: 393 NFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEVT 572
V V + + I DGY A ++ L + + D +
Sbjct: 96 TSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSDL 155
Query: 573 KGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCXILGAGL 725
+ I +S + Q + A A+L K + N+DN+++ ILG L
Sbjct: 156 ENIARTTLSSKI-LSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKL 205
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 63.3 bits (147), Expect = 4e-11
Identities = 39/146 (26%), Positives = 69/146 (47%)
Frame = +3
Query: 168 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 347
+A+ NI+A ++S GP G KM+++ +T D ++ E+ +++P A +
Sbjct: 16 QALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCI 75
Query: 348 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 527
A+ QD GDGT V +L G R G+ S I+DG+ A ++ L L S
Sbjct: 76 AKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSF 135
Query: 528 ICNEIKDTKNIKEVTKGIVAAIMSKQ 605
+ D + + V K ++ +S +
Sbjct: 136 KTDFEVDREVLLNVAKTSLSTKISSK 161
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 229 YAERTLCANCLQALIFLYTASSNPENIRA 143
+AER C NC L F YT NP I A
Sbjct: 65 FAERIFCKNCGTTLYFAYTNGKNPYFINA 93
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 525 LICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVC 704
L C+ I D K+ ++V + + I+++Q + I E + C+A E DN+ +C
Sbjct: 230 LACDGIWDCKSSQQVVEFVRRGIVARQ--SLEVICENLMDRCIASNSESCGIGCDNMTIC 287
Query: 705 XI 710
+
Sbjct: 288 IV 289
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 439 NYSAWE*LPVKLLMDMREHLTNVWKSFLLS 528
NYS WE + + L +R L N KSF+L+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT 588
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 537 EIKDTKNIK-EVTKGIVAAIMSKQYGHEQFISELV 638
E+ T NIK + ++G++ S QYG Q ISELV
Sbjct: 76 EVNVTFNIKADPSEGLLNFSQSLQYGQCQGISELV 110
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 751 IPESTSDCNSPAPRIXHTLTLSTLNVVFSGSIATQAFVTSS 629
+P S S S + TLT S +V ++G+ A TSS
Sbjct: 305 VPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSS 345
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 751 IPESTSDCNSPAPRIXHTLTLSTLNVVFSGSIATQAFVTSS 629
+P S S S TLT S V F+G+ A TSS
Sbjct: 413 VPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSS 453
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 653 NTGFRDKLRNELFMTILFRHDSSNNTLCNFFNVF 552
N F + + E+ LF HD NN L N +F
Sbjct: 230 NAPFPNFISKEILHYYLFIHDEDNNDLSNSKQIF 263
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 525 LICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVC 704
L C+ I D K ++V + + I++ + I+E + C+A E T DN+ VC
Sbjct: 227 LACDGIWDCKTSQQVIEFVRRGIVAGTSLEK--IAENLMDNCIASDTETTGLGCDNMTVC 284
Query: 705 XI 710
+
Sbjct: 285 IV 286
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 303 WCQHHW*QIAYQY 265
W HHW Q+ YQ+
Sbjct: 421 WAVHHWKQMGYQF 433
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 556 FFVSFISLQMREGRISRHLSSALSYPSAISLVV 458
FF + + + R +RH++S L+YP +I ++
Sbjct: 120 FFYTRDFPKFQSSRTARHITSLLTYPMSIGAIL 152
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 388 PSPTSASCI*LASTISLAAGCSTSNSLMMVPASLVTNCLSI*LMIILFMPLGPYAERTLC 209
P PTSAS AS SL G N ++ +V + +++I+F L + +
Sbjct: 69 PEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLIVLVIIFYCLRHFKRKKFL 128
Query: 208 A 206
A
Sbjct: 129 A 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,266
Number of Sequences: 5004
Number of extensions: 54112
Number of successful extensions: 152
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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