Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16d02
         (222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   0.34 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   1.4  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   3.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 0.34
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 126 KLCVCVCFIYHIKWT 82
           K  + +CF+Y + WT
Sbjct: 274 KAAITICFLYVLSWT 288


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 133 LIKTLCVCVFYL 98
           LI  LCV VFYL
Sbjct: 246 LISFLCVLVFYL 257


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 123 LCVCVCFIYHIKWTSGK 73
           + +C  F Y   WT+GK
Sbjct: 18  IVMCQTFTYSHGWTNGK 34


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 117 VCVCFIY 97
           VC+CFIY
Sbjct: 369 VCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 117 VCVCFIY 97
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 117 VCVCFIY 97
           VC+CFIY
Sbjct: 389 VCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 117 VCVCFIY 97
           VC+CFIY
Sbjct: 338 VCMCFIY 344


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 67  VIFARRPFYVINKTHTHTKFL 129
           +I  ++   +IN+TH + K+L
Sbjct: 45  IINGKKLTEIINETHENVKYL 65


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 69  DFCQTSILCDK*NTHTHKVFI 131
           DF   ++ CD  +   H+V +
Sbjct: 30  DFVDVTLACDGRSLKAHRVVL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,520
Number of Sequences: 438
Number of extensions: 439
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)