Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c24
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 30 0.097
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 29 0.13
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 29 0.17
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 28 0.30
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 25 2.1
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 25 3.7
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 25 3.7
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 24 4.8
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 24 4.8
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 24 6.4
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 29.9 bits (64), Expect = 0.097
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 GLLSM-RVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRP 189
GLLSM KD C F IT P D ++VVFG +I + + I +SRP
Sbjct: 104 GLLSMANAGKDSNGCQFF-ITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRP 161
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 29.5 bits (63), Expect = 0.13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 195
G+LSM + F IT P P D ++ +FGR++ + + + S RP+
Sbjct: 86 GILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIE 145
Query: 196 EISAAK 213
+ K
Sbjct: 146 PLKIIK 151
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 29.1 bits (62), Expect = 0.17
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 19 LLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVVE 198
LLSM + F IT P P D ++VVFG++I T I L + PVV
Sbjct: 100 LLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETK-NDDPVVP 158
Query: 199 I 201
+
Sbjct: 159 V 159
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 0.30
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLI 129
GL+ M T+++ F IT P P+++ + +FGR++
Sbjct: 97 GLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 2.1
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 195
GLLSM D F IT P D +VVFG ++ + + I +P+
Sbjct: 119 GLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLE 178
Query: 196 EISAAK 213
++ K
Sbjct: 179 DVKIIK 184
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 220 VDNRWVYGKSNSRIKN*CTIYFSILKMCLSKKK 318
++ R VYG S + +N I FS+ + +SK K
Sbjct: 368 IETRQVYGISLQQHRNHAKIDFSLFEKVVSKNK 400
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 3.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA 171
GLLSM + F IT P D ++VVFG + + + + LG+
Sbjct: 94 GLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGS 145
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 91 QFDLRNVVFGRLILPCETFEVIRGLG 168
++ + +++F R I P E F+V+R G
Sbjct: 24 EYAVNSILFQRGIYPAEDFKVVRKYG 49
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 4.8
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 GIFNITFKPLPQFDLRNVVFGRL-ILPCETFEVIRGLGAPLSSRPVVEISAAKHCVDNRW 234
G+F+++ K L + + + R +PC +I L S+ V IS C+D R
Sbjct: 72 GVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISRDSDCIDYRA 131
Query: 235 VYGKSNS 255
++ +S +
Sbjct: 132 MFYQSRN 138
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 70 ITFKPLPQFDLRNVVFGRLILPCETF 147
+T +PLP+ + R + +LPC+ +
Sbjct: 1323 VTVRPLPELNNRELRLEFSVLPCKMY 1348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,904
Number of Sequences: 5004
Number of extensions: 19567
Number of successful extensions: 50
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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