Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c24
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 32 0.11
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 30 0.34
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 0.34
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 29 0.60
07_03_1636 + 28290642-28291574 27 3.2
10_07_0037 - 12239296-12239367,12239484-12239606,12239699-122397... 27 4.2
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 27 4.2
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 27 4.2
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 26 5.6
07_01_0358 - 2631214-2632992 26 7.4
03_05_1102 - 30413154-30414062,30414519-30415010 26 7.4
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 25 9.7
06_01_0777 + 5811078-5811425 25 9.7
02_01_0160 + 1116160-1116678 25 9.7
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 195
G+LSM D F IT P D ++VVFGR+I + + S RP+
Sbjct: 147 GMLSMANAGPDTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPIT 206
Query: 196 EI 201
+I
Sbjct: 207 DI 208
>04_04_0927 + 29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 30.3 bits (65), Expect = 0.34
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 248 DFPYTQRLSTQCFAADISTTGRELSGAPKPRITSKVSHG 132
D P++Q+ + F++D TT L+ P +T ++ HG
Sbjct: 940 DVPFSQQNGARKFSSDGYTTEAPLAAPPTDSVTEQIEHG 978
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.3 bits (65), Expect = 0.34
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA-PLSSRPV 192
GLLSM + F ITFK + D ++ VFG+LIL + + I + S PV
Sbjct: 107 GLLSMANAGPNTNGSQFFITFKHNSRLDRKSTVFGKLILGNDVLKRIEYVDVHGAGSTPV 166
Query: 193 VEI 201
V +
Sbjct: 167 VPV 169
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 195
G+LSM + F IT P D ++ +FGR+ E + + + S RP+
Sbjct: 94 GILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIH 153
Query: 196 EISAAKHCV 222
E+ + V
Sbjct: 154 EVKILRTVV 162
>07_03_1636 + 28290642-28291574
Length = 310
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 276 RTSVFNSTIRLSVHPTVVDAVFCRRYLHHRTRAER 172
R +N+T+R +V PT A C LH RAER
Sbjct: 51 RHPAWNATLRFTVPPTAASAAGC---LHVLLRAER 82
>10_07_0037 -
12239296-12239367,12239484-12239606,12239699-12239758,
12239892-12240009,12240133-12240200,12240307-12240378,
12240677-12240834,12240964-12241199,12241643-12242007
Length = 423
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 109 VVFGRLILPCETFEVIRGLG---APLSSRPVVEISAAKHCVDNRWVYGKSNSRIK 264
V G ++ +++ V + +G S++P+ +S A +DN Y K N + K
Sbjct: 353 VTEGSSVVGIDSYAVPKSMGIFQTITSTKPITTVSVATRIIDNHEAYKKRNLKKK 407
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 37 TKDDEMCGIFNITFKPLPQFDLRNVVF 117
TK E IF+ F+P P F LR V F
Sbjct: 258 TKQCEYIAIFDADFQPEPNFLLRTVPF 284
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 195
G++SM + F I +K P + ++ VFG ++ T + + RP+
Sbjct: 429 GVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAMEKVPVDDDDRPLE 488
Query: 196 EISAAK 213
EI K
Sbjct: 489 EIKILK 494
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLI 129
G+LSM + + F IT P D ++VVFGR+I
Sbjct: 165 GMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGRVI 202
>07_01_0358 - 2631214-2632992
Length = 592
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 200 ISTTGRELSGAPKPRITSKVSHGRINLPKT 111
++T R +G+P+PR+ ++ R+ LP T
Sbjct: 87 LNTVLRIAAGSPRPRVALELHRRRLALPDT 116
>03_05_1102 - 30413154-30414062,30414519-30415010
Length = 466
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 159 RLRRPAQLASGGGDIGGK 212
RL RPA A+GGG GG+
Sbjct: 81 RLTRPAAAAAGGGGEGGE 98
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLI 129
GLLSM D F IT L + D ++VVFG+++
Sbjct: 139 GLLSMANYAKDTNGSQFFITTVKLTRLDGKHVVFGKVL 176
>06_01_0777 + 5811078-5811425
Length = 115
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 174 AQLASGGGDIGGKTLRRQPLGVRK 245
A L GGG GG R+PLG K
Sbjct: 2 ADLTGGGGGGGGSAGSRRPLGFLK 25
>02_01_0160 + 1116160-1116678
Length = 172
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 16 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA--PLSSRP 189
G+LSM + F I P D ++VVFGR++ + + I +G+ +++P
Sbjct: 103 GILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKP 162
Query: 190 VV 195
VV
Sbjct: 163 VV 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,389
Number of Sequences: 37544
Number of extensions: 136418
Number of successful extensions: 453
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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