Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16c24
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   8.3  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 246 LSVHPTVVDAVFCRRYLHH 190
           LSV P V    FCR +  H
Sbjct: 200 LSVEPKVSPMTFCRVFPFH 218


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 246 LSVHPTVVDAVFCRRYLHH 190
           LSV P V    FCR +  H
Sbjct: 200 LSVEPKVSPMTFCRVFPFH 218


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 176 SGAPKPRITSKVSHGRI 126
           SGA  P +  +++HG +
Sbjct: 639 SGAKSPTVLEELTHGTL 655


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 176 SGAPKPRITSKVSHGRI 126
           SGA  P +  +++HG +
Sbjct: 639 SGAKSPTVLEELTHGTL 655


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 176 SGAPKPRITSKVSHGRI 126
           SGA  P +  +++HG +
Sbjct: 639 SGAKSPTVLEELTHGTL 655


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 117 WKINSAVRDF*SDSRLRRPAQLASGGG 197
           W + + ++   S SR R PAQ  S  G
Sbjct: 156 WVVYNNIKRKRSWSRPREPAQTTSKAG 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,108
Number of Sequences: 438
Number of extensions: 1320
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)