Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16c19
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   1.9  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   4.3  
Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical p...    28   7.5  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   9.9  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   9.9  

>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 189 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 287
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 163 VRRRPQRRCTLAPTRTPTSLLF 228
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 465 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 587
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>Z96048-6|CAE17841.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 187 CTLAPTRT-PTSLLFISKILQNVLRTTNATSLLILLNSNRSKPYL*KK 327
           C L   +T PT    +  +LQ V +T    S L +LNS R  P   KK
Sbjct: 275 CLLTYQQTGPTRFTDLLSVLQVVTKTRQDISYLFILNSIRGPPSALKK 322


>Z81132-15|CAE17969.1|  327|Caenorhabditis elegans Hypothetical
           protein F57A10.6 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 187 CTLAPTRT-PTSLLFISKILQNVLRTTNATSLLILLNSNRSKPYL*KK 327
           C L   +T PT    +  +LQ V +T    S L +LNS R  P   KK
Sbjct: 275 CLLTYQQTGPTRFTDLLSVLQVVTKTRQDISYLFILNSIRGPPSALKK 322


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 201 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 296
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 201 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 296
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,786
Number of Sequences: 27780
Number of extensions: 324349
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)