Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c18
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 99 8e-22
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 29 0.53
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.70
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 29 0.93
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 2.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.8
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 2.8
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe... 27 3.8
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 26 5.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 6.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 6.6
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 8.7
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 8.7
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 98.7 bits (235), Expect = 8e-22
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 10/243 (4%)
Frame = +1
Query: 40 IDVSDFLTKKQASEP-ALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLY 216
+++SDFL + P +L + +E+LY +KLW QLT L F P + + LY
Sbjct: 7 VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLY 64
Query: 217 NNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKV---KMNDE------AL 369
NF+ +F IN L V + E N +A+ L ++ ++ K D A+
Sbjct: 65 TNFVNSFRPNINQLKAVYMGLKAFESCSND-EALRNLNQIVNELDEEKYKDAYVYSIVAI 123
Query: 370 ALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRGPTG 549
A K++ G++ E A KII+H++ + +H +Y ++++YY+ +
Sbjct: 124 ARIKLISGKLD-EARELLVKASKIIDHIDYV------ESLIHSSYYSVSADYYKAKADYA 176
Query: 550 RYYRAALRYVGCADGGEALPATERADIAFRLALSGVLAPDVYDLGELLAHPILHSLRGTP 729
+YYR L Y+ C D + TE + A L+++ +L D+Y+ GELL HP+ L GT
Sbjct: 177 QYYRHCLLYLSCID-LDKCSHTELVERAVDLSVAAILG-DIYNFGELLLHPVFELLVGTQ 234
Query: 730 NEW 738
+EW
Sbjct: 235 HEW 237
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 29.5 bits (63), Expect = 0.53
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 109 LEELYNKKLWHQLTLKLQEFVKNPALQRGDNLI---QLYNNFLTTFESKINPLSLVEIIA 279
+E Y WH+L +LQ+ P L NL+ Q Y + F SKI + L E+ +
Sbjct: 81 IEPNYLLTAWHELWEELQDTYMTPILDSEANLLLLTQFYGKISSLFRSKIIQV-LEELQS 139
Query: 280 HIVEQYVNKRDAVTFLEKVET 342
I E + + + L +VE+
Sbjct: 140 RINEGEKDCQPVLDSLWEVES 160
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 283 IVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLEST 462
I E++ ++D F EK + N + + + L Q Y+ ++ DY E + + L+S
Sbjct: 3023 ITEEFAVEKDV--FGEKTVVDLIPNGRNIPVTE-LNKQNYVNRMVDYKLRESVKDQLKSL 3079
Query: 463 LEDADGVTPVH 495
L+ + P H
Sbjct: 3080 LDGFSDIIPSH 3090
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 28.7 bits (61), Expect = 0.93
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 190 RGDNLIQLYNNFLTTFESKINPLSLVEIIAH--IVEQYVNKRDAVTFLEKVETKVKMNDE 363
RG N+I L TT+ES+ NP SL+ + + + D ++ VK+N
Sbjct: 861 RGGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSN 920
Query: 364 ALALCKVLQG 393
+ + V+ G
Sbjct: 921 SNTITCVVSG 930
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 730 WACPSENVGLGEPTIHPNHIHPEPALQREL 641
W CP EN+ PT P+H+ P ++ + L
Sbjct: 701 WRCPRENLTKWYPTRLPDHMAPMESINQIL 730
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 97 DWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLV 267
DW + +Y + +TL N A+ RG N+I + LTT E+K NP L+
Sbjct: 829 DWYDHKVIYRQHN-ENITLSAPLTHINVAI-RGGNIIPMQKPSLTTHETKQNPYDLL 883
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 472 HLRVYFLNVQLFSRLHHNHSAVQCIFVLVAPYTEPVLH 359
HL FL+ +LF H +VQC L P P H
Sbjct: 189 HLFPQFLSAELFESASTVHRSVQCDNCLAHPIVGPRFH 226
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 1 ENSENMATVKFAVI---DVSDFLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFV 171
+ +E M +V F VI +SDF T + +W K E+ K + Q+ Q+ +
Sbjct: 1568 KKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKRREILQKDVEEQVAQSHQKQL 1627
Query: 172 KN 177
N
Sbjct: 1628 DN 1629
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 331 KVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDAD 477
+V+ K+ + + L K + Y+ + YDA +K IE LES + D D
Sbjct: 834 EVDNKISIEETKL---KFMNVNSYV--MEQYDARKKEIEELESKMSDFD 877
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 601 PHPRRRTQRTEALRGSNGQWDHGLCNIPRLTY 506
P +R+T+ T+ALR G H LC I R+ +
Sbjct: 791 PRAQRKTRATDALRKCEGN-AHLLCTIARMLW 821
>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 517 RLTYKIVRELESHHQHLRVYFLNVQLF---SRLHHNHSAVQCIFVLVAPYT 374
R Y+I+ + H L + F V L S+ + CI V V PYT
Sbjct: 51 RQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYT 101
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 379 KVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYR 531
KV +GQI ++Q++ + +KI L D D TP+ G L SE ++
Sbjct: 288 KVSKGQI-VQQVSVFSTGKKIESQSLLNLIDTDIETPLKGSSELLYSEDFK 337
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 265 VEIIAHI--VEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEK 438
V+++ ++ VE +RD VTF +E V + +A C + + + E L D E+
Sbjct: 80 VQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEER 139
Query: 439 IIEHLEST 462
LE++
Sbjct: 140 KAILLETS 147
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 190 RGDNLIQLYNNFLTTFESKINPLSLV 267
RG +++ + LTT+ES+ NP +L+
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLL 861
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.4 bits (53), Expect = 8.7
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +1
Query: 130 KLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKR 309
+LW+ L L +FVK + L+ L + + S+ + A E++ +
Sbjct: 551 ELWN---LYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSK-SIYLLYADFEEKFGKAK 606
Query: 310 DAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQ--LNDYDAAEKIIEHL-ESTLED 471
+++ LEK KVK D LA+ VL ++ + L EK IE L +S ++D
Sbjct: 607 RSISILEKAADKVKTADR-LAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEVKD 662
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -3
Query: 225 KVIVQLYEVVSPLQGRILDEFLQF*SKLVP*FFIVKFL 112
+V+ ++Y VVS +GR++DE ++ + P FFIVK L
Sbjct: 876 EVLGRVYGVVSKRRGRVIDEEMK---EGTP-FFIVKAL 909
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 445 EHLESTLEDADGVTPVHGRFYKLASEYY 528
E +++ ++ DG HG F L SEY+
Sbjct: 756 ETMDTVIKLKDGELKAHGLFLSLRSEYF 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,625
Number of Sequences: 5004
Number of extensions: 68032
Number of successful extensions: 235
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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