Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16c18
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   7.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 342 RFHLLKECDSISLVDILF-HDMSNDLNQ**GIYFAFEGGQKVIVQLYEVVSPLQGR 178
           RF L+ +C  ++     F +   ND  +  GIYF  E  QK+ +       P + R
Sbjct: 63  RFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 248 ILLSKVVKKLLYNCMRLSPL 189
           ++ +++  KLL NC+R+SP+
Sbjct: 19  VIPAELTAKLLGNCVRVSPV 38


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 699 VSQQFTQIIYIRSQHSRES*SEGDIST 619
           V+Q+F+++I  + QH+R     G + T
Sbjct: 259 VNQKFSELIQSKPQHARRKVLAGIVQT 285


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 650 LECWLRMYMIWVNCWLTQSYI 712
           + C + + + WV+ WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 650 LECWLRMYMIWVNCWLTQSYI 712
           + C + + + WV+ WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 626 ISPSD*LSLECWLRM 670
           ++P D  SL CWL+M
Sbjct: 111 VNPYDRDSLSCWLQM 125


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 490 VHGRFYKLASEYYRVR 537
           +HG F +    YY++R
Sbjct: 578 IHGNFIESLGNYYKIR 593


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 82  PALAADWAKLEELYNK 129
           P LAA+ AKLEE+  K
Sbjct: 287 PKLAANRAKLEEIAGK 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,342
Number of Sequences: 438
Number of extensions: 5286
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)