Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c09
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 199 2e-51
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.5
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 4.5
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.5
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 4.5
Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical... 28 5.9
AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical... 28 5.9
AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical... 28 5.9
AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical... 28 5.9
AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical... 28 5.9
AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical ... 28 5.9
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 199 bits (485), Expect = 2e-51
Identities = 101/201 (50%), Positives = 133/201 (66%)
Frame = +3
Query: 123 LIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLK 302
++ +LEKTVS ++N+ + A+ Y+ A +F F++ LS +L R AAGLQLK
Sbjct: 9 MLTVLEKTVSQNQNDQKQAMDYIAAACQQDFPVFVQCLSMILRTQQCQSFVRQAAGLQLK 68
Query: 303 NHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELP 482
N L +K+ K Y QRWL L +VR +K+N+ +GTE SRPS AAQCVA +A AELP
Sbjct: 69 NVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCVAAIACAELP 128
Query: 483 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 662
W ++I +L NV QS E+ KE++LE +GYICQDID VL ++N +LTAIIHGMR
Sbjct: 129 QNLWPNVINLLKSNVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLTAIIHGMR 188
Query: 663 STEPSNHVRLAATQALLNSLE 725
E S +VR AAT ALLNSLE
Sbjct: 189 PEESSANVRFAATNALLNSLE 209
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 41.1 bits (92), Expect = 8e-04
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Frame = +3
Query: 153 PDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQ-----VARMAAGLQLKNHLTS 317
PD++ELE ++ L HA +T+ + + L+Q Q + + + ++ TS
Sbjct: 5 PDQHELEQVIQLLQHAHSTD-RDVQRNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDATS 63
Query: 318 KDPT---LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVG 488
+ LK + +W +DV+ +++ L +IG + + + V E +
Sbjct: 64 RSLAGLLLKNNIRAKWNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIVMEENMC 123
Query: 489 QWNDLIPILVENVVHVQSTELKKEATLEAIGYICQD 596
W DL+ L V +Q EL +E L A+ + +D
Sbjct: 124 DWPDLLDTLA--TVLMQPDELMQEGALGALQKVFED 157
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 294 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 386
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 294 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 386
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 73 NINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDTSTMLPPQISQHSSKCCP 240
NINL QC+Q Q + +++Q+ + + N L+ +SQ +C P
Sbjct: 170 NINLEAPAQCSQCQQSCQQQCVQQQYSVQQCNQHCNLECQPTCQQAVSQCQQQCAP 225
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 294 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 386
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 294 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 386
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z81455-6|CAN86597.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>Z81455-5|CAJ90505.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>Z81455-4|CAJ76928.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-27|CAN86620.1| 695|Caenorhabditis elegans Hypothetical
protein B0399.1f protein.
Length = 695
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 183 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 233
>AL032637-26|CAJ90512.1| 611|Caenorhabditis elegans Hypothetical
protein B0399.1e protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 99 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 149
>AL032637-25|CAJ76956.1| 680|Caenorhabditis elegans Hypothetical
protein B0399.1d protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 168 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 218
>AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 233 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 283
>AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 280 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 330
>AL032637-1|CAD54169.1| 555|Caenorhabditis elegans Hypothetical
protein B0399.1c protein.
Length = 555
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 235 NILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSACIVSLFLSLCC 71
++ + V+ ++ LTA S+S +G T S I I + SAC+VS F +CC
Sbjct: 43 SLFLAVLGLLLVIIDSELTALSSS--TGITKDSPISIILR--SACVVSTFFLICC 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,120
Number of Sequences: 27780
Number of extensions: 310745
Number of successful extensions: 980
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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