Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16c09
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 510 LVLDHSIVLLGAQLLPHTPHTVLLNLDDY 424
           LV    ++ LG  +LPH P++  L   DY
Sbjct: 253 LVTRQKLLELGWDVLPHPPYSPDLAPSDY 281


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +3

Query: 489 QWNDLIPILVENVVHVQSTELKKEATLE 572
           QW+  +P++V+  + +   +L K  T +
Sbjct: 194 QWDPDVPLVVDENIELPQLQLVKNYTAD 221


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 483 VGQWNDLIPILVEN 524
           VG WN L+P   EN
Sbjct: 338 VGCWNSLLPYSPEN 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 181 LDTSTMLPPQISQHSSKCCPMS 246
           L+   M+PP I Q S    PM+
Sbjct: 575 LEVQVMVPPTIQQFSFTKLPMN 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,240
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)