Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c01
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260... 135 3e-32
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 29 4.1
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 29 5.4
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 5.4
06_01_0248 - 1871955-1872199,1872289-1872447,1873139-1873237,187... 28 7.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 7.1
02_03_0349 + 18010414-18014283 28 7.1
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 9.4
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 9.4
>05_04_0160 -
18624952-18625106,18625411-18625535,18625954-18626087,
18626221-18626298,18626456-18626561,18627739-18627836
Length = 231
Score = 135 bits (327), Expect = 3e-32
Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Frame = +3
Query: 153 SHVSCYCEENVWKLCQDV---SLRVPEELDRCYVVFISNPCRTVPLWKQRAGREEDRLVI 323
+H YCEENV LC+++ + P + Y VFISN + VPLW Q+A D V+
Sbjct: 27 THTPYYCEENVHLLCKELIRSGISDPAGTN-LYAVFISNEEKKVPLWYQKASHSGDGFVL 85
Query: 324 WDYHVIFLYSVDIKS---CLVYDLDSELPFPTFFHKYVTETFRTDQVLKSDFHRFFRVVT 494
WDYHVI + S LV+DLDS LPFP F +YV++ R S + R FRV+
Sbjct: 86 WDYHVICIQSRRKNGEVLDLVWDLDSSLPFPCSFIQYVSDAIRPLSFGNSTYRRLFRVIH 145
Query: 495 AKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAI-STSVSTHNLDEYINMDVD 644
A FL+ F+SDR HMK G+WI+ PP Y +I + +T+NL+EYI M +D
Sbjct: 146 APVFLRSFASDRSHMKDHAGNWIQLPPKYESIVAEDGTTNNLNEYITMSMD 196
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 519 SSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYI 629
SS R K+ + S + P PP+P S +++NL Y+
Sbjct: 642 SSPLRQFKQSNWSCL-PSPPHPTFSNGATSYNLSSYM 677
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 543 RPDGSWIKPPPPYPAISTSVSTHNLDEYINMDVDTGPGQVYNLT 674
+P+ + + P P++ T + N+D+ +M +GPG V NL+
Sbjct: 492 KPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLS 535
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 498 KQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINMDVDTGPGQVYNLT 674
+Q + L S RR K D IK TS+ N DE MD+D V+N+T
Sbjct: 623 QQVVALTDSRRRSEKLTD---IKMDSTSNVSRTSLKQRNSDEVNQMDIDDRSNSVHNIT 678
>06_01_0248 -
1871955-1872199,1872289-1872447,1873139-1873237,
1873420-1873589,1874420-1874868
Length = 373
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 474 RFFRVVTAKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAIST 596
RF R + L SS +R+ P+ PPP Y A+ T
Sbjct: 43 RFLRSLLTNDLLLSSSSQQRYAPTPNAPARAPPPAYAALLT 83
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 713 VLLVNFVETLDKICQVVDLPRSCVY 639
V +V F++ LD +CQ D+P S +Y
Sbjct: 1101 VAMVEFIKGLDPVCQEKDIPFSRLY 1125
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 447 LCEKFLLHICGKMLEMVILNQDHIQ 373
L E++LLH C + E+V+ N H+Q
Sbjct: 1196 LPEEYLLHNCHALEELVLTNASHLQ 1220
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +1
Query: 283 GNKGPGVKKIVSSYGIIM*YSCILWISSLVLYMILIQNYHFQHFSTNM*QKLFAQTKSSN 462
GN+ P +K+ S++ I SC++W+ V ++ + + F+ + M +F+ ++
Sbjct: 990 GNEFPELKQY-SAFSKIFGGSCLIWLLRSVQELVSLSHKIFEEHTDEMKNTIFSLVDKTS 1048
Query: 463 QI 468
+I
Sbjct: 1049 EI 1050
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 510 QLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTH--NLDEYINMDVD-TGPGQVYNLT 674
+LF+ M DG P P +S S H N +++MD+D TG G+V +T
Sbjct: 732 ELFAQFSSLMNNFDGDNPSKMLPVPFVSLSEDLHPDNRSSFVDMDLDMTGSGEVDPVT 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,169
Number of Sequences: 37544
Number of extensions: 469517
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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