Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16c01
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-6|CAA95844.1| 184|Caenorhabditis elegans Hypothetical pr... 124 5e-29
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 31 0.68
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 31 0.68
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 30 1.6
U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical p... 29 3.6
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.6
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 28 8.4
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 28 8.4
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 28 8.4
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 28 8.4
>Z71266-6|CAA95844.1| 184|Caenorhabditis elegans Hypothetical
protein R06C7.6 protein.
Length = 184
Score = 124 bits (300), Expect = 5e-29
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Frame = +3
Query: 144 EECSHVSCYCEENVWKLCQDVSLRVPEELDRCYVVFISNPCRTVPLWKQRAGREEDRLVI 323
EE + SCYCEENV+KL + + ++ + + + ISN C+ +PLWKQ+A + + V+
Sbjct: 5 EEALYQSCYCEENVYKLIEKI-----DDKNGIFAIIISNDCKMIPLWKQKAAKSINGHVL 59
Query: 324 WDYHVIFLYSVDIKSCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSD--FHRFFRVVTA 497
WDYHVI + + VYDLDS L + F +Y +T ++ + D F R FRV+
Sbjct: 60 WDYHVIAI-EKEKNGSKVYDLDSTLEWSCDFLEYWEKTMNLAEMAQRDTKFRRKFRVIPG 118
Query: 498 KQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINMDVDTGPGQVYNLTD 677
+ ++ L SSDR HM +G ++KPPP +P I+ S NL E I M V + +
Sbjct: 119 ENYISLLSSDRSHMLSKNGVYLKPPPEWPLIN-SHKPSNLMELIRMSEQIENTTVMDEPE 177
Query: 678 FVQRFYK 698
Q F K
Sbjct: 178 LFQLFSK 184
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 31.5 bits (68), Expect = 0.68
Identities = 27/66 (40%), Positives = 33/66 (50%)
Frame = +3
Query: 456 LKSDFHRFFRVVTAKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINM 635
LKS R + +T L S R H++R GS++KPPP I TS S NL
Sbjct: 617 LKSLSDRMKKGITQSNTL---SDIREHLRR-SGSFVKPPP--SGIPTSSSEQNLP----- 665
Query: 636 DVDTGP 653
DV TGP
Sbjct: 666 DVATGP 671
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
receptor-mediated endocytosis 6 protein.
Length = 1093
Score = 31.5 bits (68), Expect = 0.68
Identities = 27/66 (40%), Positives = 33/66 (50%)
Frame = +3
Query: 456 LKSDFHRFFRVVTAKQFLQLFSSDRRHMKRPDGSWIKPPPPYPAISTSVSTHNLDEYINM 635
LKS R + +T L S R H++R GS++KPPP I TS S NL
Sbjct: 617 LKSLSDRMKKGITQSNTL---SDIREHLRR-SGSFVKPPP--SGIPTSSSEQNLP----- 665
Query: 636 DVDTGP 653
DV TGP
Sbjct: 666 DVATGP 671
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 570 PPPYPAISTSVSTHNLDEYINMDV 641
PPP P TS H DEY +MD+
Sbjct: 492 PPPAPQRQTSYDRHGFDEYDDMDM 515
>U13875-12|AAA21157.2| 321|Caenorhabditis elegans Hypothetical
protein C26E6.3 protein.
Length = 321
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 144 EECSHVSCYCEENVWKLCQDVSLRVPEELDRCYVVFISNPCRTV 275
E SHV + V KL ++ S+R+ + + RCY NP T+
Sbjct: 216 ERFSHVVLILGKMVMKLTREPSVRLLKHVVRCYSRLSDNPTLTI 259
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 99 IKSDKTIIKPLFP-KREECSHVSCYCEENVWKLCQDVSLRVP 221
IKS +T +K LF EEC H+S NV K+ + + RVP
Sbjct: 171 IKSVETQLKNLFEFNPEECLHISAKSGLNVDKVLEAIIDRVP 212
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 232 IDAMSFSFRTLAAQCLFGNKGP 297
ID+ +FS+RT+AA LF N P
Sbjct: 412 IDSFTFSYRTIAAAVLFVNYEP 433
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 232 IDAMSFSFRTLAAQCLFGNKGP 297
ID+ +FS+RT+AA LF N P
Sbjct: 415 IDSFTFSYRTIAAAVLFVNYEP 436
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 232 IDAMSFSFRTLAAQCLFGNKGP 297
ID+ +FS+RT+AA LF N P
Sbjct: 415 IDSFTFSYRTIAAAVLFVNYEP 436
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 232 IDAMSFSFRTLAAQCLFGNKGP 297
ID+ +FS+RT+AA LF N P
Sbjct: 415 IDSFTFSYRTIAAAVLFVNYEP 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,008,261
Number of Sequences: 27780
Number of extensions: 446016
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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