Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16b21
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    28   0.86 
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.6  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   6.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   8.0  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 400 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 293
           CCN++  H        + H   +N  TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -3

Query: 197 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 39
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 38  N*DD 27
             DD
Sbjct: 207 EDDD 210


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 257  LQHIAPSITL*FFKYVL*MYFTSRFLSA 174
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 241  GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 381
            G  CC    NG  L    L R   +N+D  +L S  YT  N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 392  LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 300
            L T+THT  HN   L    S L  T   ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 283 LDRNQLQNTDMEVLESLEYTSDNVE 357
           +D N  +++D++    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 320 CWKV*NTLVTTLNCYAKKY 376
           CWK   T+V  L  Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 554 TYWRMSEYFCTYEIFCCIRNI 492
           TYW    Y CT+   CCI  I
Sbjct: 486 TYWVTLSYLCTFT--CCIMTI 504


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 325 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKN 417
           +S+EY  +N++ +  K+  +VD  N YY  +
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYYNND 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,311
Number of Sequences: 5004
Number of extensions: 55408
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)