Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16b10
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    30   2.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    29   2.9  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   5.1  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    28   8.9  

>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 559 MQQLKTMKVLFYNVFFILQCAMCR----DHYMNVKGFLIYHIELIEIALDKEKYGTDI 720
           M++LK   ++    +++ +  +CR    DHY  +K F+I ++  +E   +KE Y   I
Sbjct: 1   MKRLKLRTLISNEYYYVAEAEVCRAPLADHYKVLKNFIISYVRKLE--ENKELYSAGI 56


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +3

Query: 360 H*RIPRHGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHH--ALSQSHHRRYG 524
           H     H    V HR +G++H T  +     E   H  HH  HH       HH  +G
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHG 446


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +1

Query: 127 YSTIVLLVAMIPLT--PLFSRYKDSYLLYSFR-----LIDLLRASKSAHLTKLLSSQAT- 282
           +ST+ ++ + + +T  P    Y  S L +S        + LL +S SA    +++  A  
Sbjct: 50  FSTLGIVFSALEITAKPFSHNYNGSLLYFSTSELPETFVSLLMSSWSAFYIIVVAFIAVQ 109

Query: 283 YLYHFACLMKYKDIQKYEVQQLIEWAI 363
           ++Y + CL  Y   +K++  + + W I
Sbjct: 110 FVYRYLCLTNYNATKKFDGVKTVFWII 136


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 427 LNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMV-YTRDKSSLDFVMQQLKTMKVLFYNVF 603
           L L  C P  F+  F+++     F+S+++  +   TR++    F++ +L ++ V FY+ F
Sbjct: 735 LPLEHCSPFGFSKYFSSLLLCSEFISIVLPLIKRRTRERIIRVFIISRL-SIFVHFYHDF 793

Query: 604 FIL 612
           F+L
Sbjct: 794 FLL 796


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 121 VRRRPQRRCTLAPTRTPTSLLF 56
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>U70851-5|AAB09127.1|  305|Caenorhabditis elegans Hypothetical
           protein M02B7.1 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 519 YGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLY 641
           Y +   Q  S    + +E DE  IL+   H  +RHVPR L+
Sbjct: 137 YSIIIPQSLSMEMLSRIEQDE--ILKTAKHLDIRHVPRELF 175


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 300 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 419
           +F E+Q+HS+I  A V+++   R   H LA    T  H  YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328


>AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.11 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/54 (18%), Positives = 32/54 (59%)
 Frame = +1

Query: 484 DTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 645
           +T   L + ++++     +SS   ++++LK  +++FY+++  ++  +   HY++
Sbjct: 87  ETKILLEVALNELYEETMESSAKMLLEELKCARLVFYSLYRCIRQGIAVGHYLD 140


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 583 VLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQ 744
           ++FYNVF +    + ++H       LI + E  E + D   Y T    +D +Q+
Sbjct: 330 IIFYNVFVMFPAIILQEHLKTTTRILINNDE-FECSKDPIVYQTYRIMIDRFQK 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,255
Number of Sequences: 27780
Number of extensions: 422952
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)