Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16b05
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     32   0.39 
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     30   1.6  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   6.3  

>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
 Frame = -1

Query: 526  LTSTYYQSIELVFLFKIASSACSI---SNFFRTLLAL*LGMSSTLDSVFLLIMAGLTTIM 356
            L ST  ++ +L  L KI S  C I   +++  TLL    G    LD + ++    +T I 
Sbjct: 1229 LHSTLLKNADLQILAKIPSICCLILLGNSYDDTLLTFNKGEFPKLD-LLIVECPTITNIS 1287

Query: 355  NTRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKFIFIPLLYSL 227
             T       +K+++SF   TK+N +S  NN  K   + L+  L
Sbjct: 1288 FTEGAAPMLEKIIWSF---TKMNSLSGINNLSKLKELELIGDL 1327


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = -1

Query: 358 MNTRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKFIFIPLLYSLR*YNNDSPDEPDELRL 179
           +NTR     YK   F F S  K ++       Y +IF+ +L  +R Y    PD+   L  
Sbjct: 60  LNTRVPAPFYKHDFFFFKSLLKYDL-------YFYIFVHILNKVRGYVYYCPDKKVSLHP 112

Query: 178 CCA 170
           CCA
Sbjct: 113 CCA 115


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 553 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 386
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,447
Number of Sequences: 37544
Number of extensions: 237374
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)