Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16a19
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   0.50 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.1  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 LDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNRCI 327
           LDE    KLIE +  VF   N+ ++ I  + +I L + +
Sbjct: 189 LDEDTKNKLIEESKTVFILNNEIIRSIQGTGTIILKKTV 227


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 229 LLAFHLKNQTVCPARLRILWCNRACRC 149
           L  + LK++   P    I  CN+ C C
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNC 480


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 276 KFKIYSQQHQHMFKSLYKFNYNKTLCTIK 362
           +FK+   + + M  SL   NY++  C I+
Sbjct: 187 QFKVLGHRQRAMEISLTTGNYSRLACEIQ 215


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 276 KFKIYSQQHQHMFKSLYKFNYNKTLCTIK 362
           +FK+   + + M  SL   NY++  C I+
Sbjct: 126 QFKVLGHRQRAMEISLTTGNYSRLACEIQ 154


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 104 CKRMSFVTASTD 69
           CKR + +TA+TD
Sbjct: 174 CKRTATITAATD 185


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 108 VLQTNELCHRVHGRVHVSFLK 46
           ++QT +  + ++   H SFLK
Sbjct: 95  IIQTEKYSNMLNSEKHASFLK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,354
Number of Sequences: 438
Number of extensions: 1709
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)