Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16a03
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    38   7e-04
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   1.0  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   4.1  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.5  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   5.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   7.2  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    24   9.5  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 37.5 bits (83), Expect = 7e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -1

Query: 341 VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSA 162
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + 
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 161 LHNQLQNHMILHLIA 117
           L N ++ H  L  +A
Sbjct: 106 LRNSIKQHQQLKELA 120


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 220 NNNVNY*VPHTNLTSHKCQHYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 65
           NN+ NY V       H+C+ ++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 37  ENFHFFLHSGSEFDIIM*CIFDFCTHYAIK 126
           ENFH     G   +    C+++   H+A+K
Sbjct: 68  ENFHILFMQGGGTEQFAACLYNVYAHHALK 97


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 199 VPHTNLTSHKCQHYIISF 146
           +PHT  ++H   H+IISF
Sbjct: 2   LPHTAFSNHIHYHFIISF 19


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 209 QLLGSAHQFNKSQMSALHNQLQNHMI 132
           QLLGSA  F  SQ++A+H  ++   +
Sbjct: 304 QLLGSAKGFVVSQVAAMHLSIRKRAL 329


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 1   VLSILNLSFVGIENFHFFLHSGSEFDIIM-*CIFDFCTHY 117
           + ++L + F+G   FH  L + +  +I++  C  +FC  +
Sbjct: 123 IQAVLEMVFIGKLGFHAILDTNASREIVLQQCAQEFCNSW 162


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 77   SNSLPLCKKKWKFSIPTKLK 18
            SN L   KKKWK+    KL+
Sbjct: 1250 SNWLKYAKKKWKYQKQVKLR 1269


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 346 HVCSFCMNFSGKTQTRTLLGS 284
           H   FC NF GK  + ++  S
Sbjct: 349 HFMDFCSNFKGKNNSSSITSS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,057
Number of Sequences: 5004
Number of extensions: 26481
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)