Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc16a02
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.092
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.12 
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    30   0.37 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    29   0.49 
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    29   0.65 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    29   0.65 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.1  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   2.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   2.0  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    27   2.6  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   2.6  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.6  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   4.6  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   8.0  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   8.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.0  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    25   8.0  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +3

Query: 219 KKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVC 398
           K+  V++ +  C +C++       + C       CDH FC  C      + ++   S++ 
Sbjct: 120 KQREVVHHEGTCEICYD-------EGCLPFFSAECDHEFCLACYRQYLDSRISEGESVIQ 172

Query: 399 CP 404
           CP
Sbjct: 173 CP 174


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVK 425
           C +C +   ++   T P+   T C H +C+ C++       N     V CP+C  +++
Sbjct: 192 CMMCVQRGDERVAITTPYT--TDCGHTYCYACIMSRLKLVNN-----VSCPICKHRIR 242


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = +3

Query: 321 CDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMWRSLKPNAVVTCKFYKKTQERVPA 500
           C H FC  C+I LQ   ++       CPLC  + ++ ++   N       + KT      
Sbjct: 375 CSHVFCLHCLIILQKQKVDF------CPLCRAK-EVMKADSRNIDHALMNFMKTYFPREI 427

Query: 501 VQQYKNIIKVLQERSVISVENSDNNCDI 584
            ++++         S ISV +  NNC I
Sbjct: 428 KEKFEENENDTFTPSSISVVSGQNNCVI 455


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 510 YKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEE 689
           Y  I+ +L+    IS E     C    +N  ++  LEA+L+  + H D  T  + + +EE
Sbjct: 635 YNMILNLLRVEG-ISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEE 693


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 243 KFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVID 356
           KF+C+VCF+ +    N T  F + T C H  C  C+ D
Sbjct: 171 KFQCNVCFDEF----NGTDCFQL-TRCGHVSCQSCLRD 203


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/74 (20%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +3

Query: 477 KTQERVPAVQQYKNIIKV------LQERSVISVENSDNNCDINMENQAKIVALEAELKNE 638
           K +E++ A+  Y+++          Q++ +   +N +   ++ + ++ ++VALE+    E
Sbjct: 23  KEKEKINAINTYEDVANSEDEFYNAQDKILFDADNGEQADELELSDE-ELVALESSSDEE 81

Query: 639 KNHSDQVTSENRQL 680
             ++++  SEN +L
Sbjct: 82  DGNAEENLSENEEL 95


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 675 VGFQ--KLLDHCDFFRSLIQLPKQLFLPDSPYLCH 577
           +GFQ  K+    D+F  L +L ++L   D  Y+CH
Sbjct: 324 LGFQPYKITYSSDYFDKLYELAEELIKRDKAYVCH 358


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 249 ECSVC-FETYSQQSNDTCPFLIPTTCDHGFCFKCV 350
           +CSVC FE +  +        I + C HGFC++C+
Sbjct: 626 KCSVCNFERWKDR--------IISLCGHGFCYQCI 652


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 201 RMMAELKKEPVINFKFECSVCFETYSQQSN----DTCPFLIPTTCDHGFCFKCVIDLQSN 368
           RM+ ELK     N  +ECSVC +T +  ++     TC  +   +C   +C   +     +
Sbjct: 185 RMIVELK-----NRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNED 239

Query: 369 AMNIPH 386
           A   P+
Sbjct: 240 AWRCPY 245


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 216 LKKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVI 353
           +K E   +  F C +C + Y           I TTC H FC +C I
Sbjct: 242 VKNEKKEDIPFVCLICKKDYRSP--------IATTCGHHFCEQCAI 279


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 240 FKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQ 419
           F  EC +C E++++        ++   C H F   C+       ++  H+   CP CNT+
Sbjct: 317 FGVECVICLESFTKGDK-----VVALPCKHEFHRPCIAKW---IVDYRHA---CPTCNTE 365

Query: 420 V 422
           V
Sbjct: 366 V 366


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 656 LITVIFFVL*FSFQSNYFCLILHIYVTIVVAVFDTNHAP 540
           L+  +FF++ F   S  F LILH+ V   V VF   H P
Sbjct: 16  LVLRLFFLVVFGLYS--FTLILHLLVINRVDVFSLLHTP 52


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 249 ECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIP 383
           EC +C E   +      PF   T C H +C++C+++    + + P
Sbjct: 84  ECPICTEALQR------PFT--THCGHTYCYECLLNWLKESKSCP 120


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 143 IAPLQSVFQLSVEIFKRRTFIWRRPVAAAIVGVPWHFAY 27
           I  L+ V QL VE+      +W  P+   ++   + FAY
Sbjct: 82  IKSLKDVVQLQVELDDSGKVLWLCPITRHVMSDTYQFAY 120


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +3

Query: 189 IKQQRMMAELKKEPVI-NFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQS 365
           I  +R + +  K P I     +CS+C E         CP    T C H FC+ C+    S
Sbjct: 234 ITDERDLEDKNKLPFIPEGNRKCSLCMEFIH------CP--AATECGHIFCWSCINGWTS 285

Query: 366 NAMNIP 383
                P
Sbjct: 286 KKSECP 291


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 270 FRNTHCTQI*N*LPALSLIPPSFAAVLFVW 181
           +  + C  +   LPAL+  P +F+A+L VW
Sbjct: 78  YATSDCNTLEYLLPALAQSPYNFSAILGVW 107


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 477 KTQERVPAVQQYKNIIKVLQERSVI--SVENSDNNCDINMENQAKI-VALEAELKNEKNH 647
           +T  ++P  ++ +   +VLQ ++++  S E+S     +  ++Q  I V+   +L+N+   
Sbjct: 527 ETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSHEPVKVTEDSQTAIHVSKFEDLENKSME 586

Query: 648 SDQ 656
           S+Q
Sbjct: 587 SEQ 589


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 328 WSHVVGIKKGQVSLDC*EYVSKHTLHSNLKLITGSFFNSAIIR 200
           +  V+ + +G+ S +  E +++ +   +  LITG F NS  +R
Sbjct: 373 FDEVLKLSEGKQSKEPSEVLTEESAEPHFSLITGKFVNSTPMR 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,078
Number of Sequences: 5004
Number of extensions: 58923
Number of successful extensions: 217
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)