Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc16a01
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 32 0.077
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.41
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 29 0.54
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.72
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 29 0.95
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 3.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.8
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 5.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.7
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 6.7
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 6.7
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 32.3 bits (70), Expect = 0.077
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 133 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 312
D D SL + V N+ +ND+I N+ + +LS D + TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254
Query: 313 HRFVDDNVLTQDE 351
++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 133 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 300
D D + L R+ +F+ND + + +K + S R+ V L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 570 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 731
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 196 NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 375
+D++ +T D N+ ++ + F I ALL + ++F+DDN T S + F
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365
Query: 376 VTKLDEAYQ 402
L+ Q
Sbjct: 366 TALLNSFEQ 374
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 477 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 617
NL N ++ S+K + +I D PK +++ LN+VP + +DD
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDD 377
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 118 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 285
+QV+PD S + R++N F+ND E + KL + + +S R++ + +L
Sbjct: 46 KQVHPDTGISNQAMRILNSFVNDIFERIATEASKLA-AYNKKSTISSREIQTAVRLIL 102
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 389 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 291
SSF+ RKF LSSS ++ L++ N++ T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 549 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 659
+E +P++V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +3
Query: 516 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFET 695
N + + ++ K + + +P ++ F+ID P+Q+D +NA+ F
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAP 944
Query: 696 LN 701
N
Sbjct: 945 YN 946
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 438 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 560
K+ L +QFQ S+ NL+N Q ++ ++ +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 407 GNWYASSSFVTRKFAKKLSSSCVKTLSST 321
G WY+ S T K+L SC L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +1
Query: 184 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 282
+EIEN+ + K VET+D + K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 624 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 725
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,760
Number of Sequences: 5004
Number of extensions: 54089
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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