Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p23
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   3.0  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   3.0  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    27   5.3  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    26   9.3  

>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 51  FLLKHVWFL*PKDYQ*PDGITSFTRASITKCNLNLTADAGEGSNRYVF-VPF 203
           FL+    FL   D + P G+ S T   +T C  N+   AG    RY+F +P+
Sbjct: 70  FLVFSFLFLQAMDTESPLGVFSATFGFLTVCITNVLLIAGVRLKRYIFLIPY 121


>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 276 WRIDKLLRFIRQCHLASEMVWRDLKKVRIHI--GCSLLQHQLSSSDCTSLYLPW*NW*CH 103
           W+ID LL +IR       M   DL+++ I+   G    +  ++ S+   ++ P+ ++  H
Sbjct: 174 WQIDPLLNYIRNFKKYEAMEQPDLEQIIINFYKGAMPEKGSMTDSEIVRIFKPFWSFYFH 233

Query: 102 QVIGNPLV 79
            +I  P++
Sbjct: 234 NMI-QPII 240


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -3

Query: 324 QILQSNDQLYLCKYC---KWRIDKLLRFIRQCHLASEMVW 214
           +++  N Q YLC+ C    W +  L R  R     S+  W
Sbjct: 252 RLIHDNTQYYLCRNCPYVSWNVSSLWRHFRHHIQKSKQSW 291


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -3

Query: 324 QILQSNDQLYLCKYC---KWRIDKLLRFIRQCHLASEMVW 214
           +++  N Q YLC+ C    W +  L R  R     S+  W
Sbjct: 252 RLIHDNTQYYLCRNCPYVSWNVSSLWRHFRHHIQKSKQSW 291


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  PLPLFVRGVRVCGSC*NMFGSY 78
           PLP F   ++V GSC  M G Y
Sbjct: 582 PLPSFPSSIKVFGSCTEMHGYY 603


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
          receptor protein 130 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2  PSLRLCLFLCVAFVCAVLVETCLVLMTK 85
          P LR+C FLC  F  A++  T L+ + K
Sbjct: 5  PYLRICQFLC--FFIAIMANTVLLYLIK 30


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 226 RNGLERFEKGTNTYRLLPSPASAVKFR 146
           RNG++   K  N  R +P PAS    R
Sbjct: 39  RNGMQSVGKAANVVRRMPPPASLPSLR 65


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 265 QAIEIHKTMSFGFRNGLERFEKGTNTYRLLPSPASAVKFRL 143
           +A  I +T +F F N +ERF   ++  ++   P +    +L
Sbjct: 404 KAFNIRRTQNFDFENKIERFRFFSDPNKIDSEPGTEFSIKL 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,441
Number of Sequences: 27780
Number of extensions: 181718
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)